Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   C0638_RS11800 Genome accession   NZ_CP025696
Coordinates   2622545..2623498 (+) Length   317 a.a.
NCBI ID   WP_058711509.1    Uniprot ID   -
Organism   Paenibacillus sp. lzh-N1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2617545..2628498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0638_RS11785 (C0638_11785) - 2619900..2620577 (-) 678 WP_058711512.1 ABC transporter ATP-binding protein -
  C0638_RS11790 (C0638_11790) - 2620685..2621605 (-) 921 WP_058711511.1 HAMP domain-containing sensor histidine kinase -
  C0638_RS11795 (C0638_11795) - 2621606..2622283 (-) 678 WP_058711510.1 response regulator transcription factor -
  C0638_RS11800 (C0638_11800) ceuB 2622545..2623498 (+) 954 WP_058711509.1 ABC transporter permease Machinery gene
  C0638_RS11805 (C0638_11805) - 2623488..2624438 (+) 951 WP_044786281.1 iron chelate uptake ABC transporter family permease subunit -
  C0638_RS11810 (C0638_11810) - 2624432..2625190 (+) 759 WP_013373133.1 ABC transporter ATP-binding protein -
  C0638_RS11815 (C0638_11815) - 2625203..2626183 (+) 981 WP_058711508.1 siderophore ABC transporter substrate-binding protein -
  C0638_RS11820 (C0638_11820) - 2626217..2626960 (+) 744 WP_058711507.1 alpha/beta hydrolase-fold protein -
  C0638_RS11825 (C0638_11825) - 2627060..2628496 (-) 1437 WP_058711506.1 DUF4179 domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34776.78 Da        Isoelectric Point: 9.9012

>NTDB_id=263414 C0638_RS11800 WP_058711509.1 2622545..2623498(+) (ceuB) [Paenibacillus sp. lzh-N1]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGTAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=263414 C0638_RS11800 WP_058711509.1 2622545..2623498(+) (ceuB) [Paenibacillus sp. lzh-N1]
ATGAAATTGCGCTATTTAATATTAGCTTTTCTGGTACTGGCCTTCGCCTCGGTGTTCATCGGTGTTCATGATGTGACTCC
ACTTGATTTGTTCCACTTAACCAACGATCAAGCGCAGGTGCTCCTGATTAGCAGATTTCCACGTTTGATCAGCATCATTA
TCGCAGGGGCGAGTATGAGTATCTGCGGGCTGATTATGCAGCAGCTTACCCGGAATCGGTTTGTTTCGCCCACCACCGCA
GGGACGATGGATGCGGCACGATTAGGTGTGCTGATGGCCATTATGGTGTTTGGAACGGCGGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACGCTGATTTTCATGAAGATATTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTTGGTCTGATGTTTGGGGGCATTTTAAATTCGGTGACGACTTTTTTTGCCTACAAATATAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGCCGCTACGAGATGCTGTATCTTAGTGTTCC
TTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGTATGGGTGAGGATTTTGCAGCCAACTTGGGCG
TACATTACAAGCGCACCGTCAATGTGGGTTTGGTGATCGTGGCTTTGGTGTCCTCTGTTGTCATCTTAACCGTCGGGACA
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGTATGTACATGGGGGATAATCTGAAAAAGAGCCTGGCTCATAC
AGCGATCTTGGGCGCCGTTTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508

Multiple sequence alignment