Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   C0682_RS08920 Genome accession   NZ_CP025690
Coordinates   1843657..1844934 (-) Length   425 a.a.
NCBI ID   WP_072540673.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain IRG1     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1838657..1849934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0682_RS08915 (C0682_08925) - 1841908..1843617 (-) 1710 WP_003640732.1 proline--tRNA ligase -
  C0682_RS08920 (C0682_08930) eeP 1843657..1844934 (-) 1278 WP_072540673.1 RIP metalloprotease RseP Regulator
  C0682_RS08925 (C0682_08935) - 1844972..1845757 (-) 786 WP_003640734.1 phosphatidate cytidylyltransferase -
  C0682_RS08930 (C0682_08940) - 1845773..1846552 (-) 780 WP_003640735.1 isoprenyl transferase -
  C0682_RS08935 (C0682_08945) frr 1846672..1847235 (-) 564 WP_003640736.1 ribosome recycling factor -
  C0682_RS08940 (C0682_08950) pyrH 1847237..1847959 (-) 723 WP_003640737.1 UMP kinase -
  C0682_RS08945 (C0682_08955) tsf 1848160..1849038 (-) 879 WP_003644498.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 45811.31 Da        Isoelectric Point: 9.5616

>NTDB_id=263390 C0682_RS08920 WP_072540673.1 1843657..1844934(-) (eeP) [Lactiplantibacillus plantarum strain IRG1]
MIVTIITFIIVFGILVIVHEFGHFYFAKKAGILVREFSVGMGPKAVAFRRNATTYTLRFLPIGGYVRMAGVADDEDEELK
PGTPVSLQIGPDGIVHSINASKKATLFNGIPLSVTATDLEKELWIEGYENGDESEVKHYAVDHDATIVESDGTEVQIAPV
DVQFQSAKLWQRMLTNFAGPMNNFILAIITFAILAFMQGGVTSTTTHVAATTADSVARTAGIQKGDQIVAVNGKKMTSAQ
SISLLIQDSPKQRLTLTINRAGQTKKIAVTPAAKTVSGNRIGQIGVQWATKTDTSLGAKLAYGFTGSWGITKQIFQVLGR
MVTHGFSLNDLGGPVAIFATTSQAAKSGVRTVIYLLAVLSINLGIVNLLPIPALDGGKLLLNIVEGIRGKPLRVETESVI
TLIGFGLLMLLMILVTWNDIQRYFF

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=263390 C0682_RS08920 WP_072540673.1 1843657..1844934(-) (eeP) [Lactiplantibacillus plantarum strain IRG1]
TTGATCGTTACAATTATTACGTTCATTATCGTTTTCGGAATCTTGGTCATCGTCCATGAATTTGGGCACTTTTACTTTGC
CAAAAAGGCTGGGATTCTAGTGCGTGAATTTTCTGTCGGGATGGGGCCCAAGGCGGTCGCGTTTCGTCGTAATGCAACAA
CTTATACGTTACGGTTTCTGCCAATCGGTGGTTACGTACGGATGGCCGGGGTGGCCGATGATGAAGATGAAGAACTCAAG
CCCGGAACGCCAGTTAGTTTGCAAATTGGTCCGGATGGTATTGTTCATTCAATCAATGCTAGTAAGAAGGCAACGTTGTT
CAATGGAATTCCACTGTCAGTGACGGCGACTGATCTCGAAAAAGAACTCTGGATCGAAGGTTATGAGAACGGGGACGAAA
GTGAAGTTAAACACTACGCCGTCGATCATGACGCTACGATCGTTGAAAGCGATGGTACCGAAGTTCAAATTGCACCGGTC
GACGTCCAATTTCAATCGGCCAAGTTATGGCAACGAATGTTGACGAATTTTGCCGGACCGATGAATAACTTCATTTTGGC
CATCATTACATTTGCAATTCTTGCCTTTATGCAGGGTGGTGTTACGAGTACAACGACCCACGTAGCGGCGACGACAGCAG
ACTCAGTTGCCCGTACGGCCGGTATTCAAAAGGGCGATCAAATCGTGGCGGTTAACGGTAAAAAAATGACGAGTGCCCAA
TCGATTTCGCTGTTGATTCAAGACAGCCCGAAGCAACGGTTGACTTTGACCATCAACCGGGCCGGTCAGACTAAAAAAAT
TGCGGTTACCCCTGCTGCCAAGACGGTCTCTGGTAATCGAATCGGTCAAATCGGGGTCCAATGGGCGACTAAGACCGACA
CGAGCCTGGGGGCCAAGTTAGCATACGGCTTTACTGGTTCGTGGGGAATTACCAAACAAATTTTTCAAGTGCTTGGTCGG
ATGGTCACTCACGGGTTCAGTTTGAACGATTTAGGTGGGCCGGTGGCAATCTTTGCCACGACCTCGCAAGCCGCTAAGTC
CGGGGTGCGCACGGTGATATATTTGCTCGCCGTGCTGTCGATCAACCTTGGAATTGTTAATTTATTACCGATTCCAGCAC
TTGATGGTGGTAAACTATTATTAAACATTGTTGAAGGCATTCGGGGTAAACCACTACGGGTGGAAACGGAAAGTGTCATT
ACCTTGATTGGTTTTGGCCTCCTGATGTTATTAATGATTCTAGTAACTTGGAATGATATTCAGCGATATTTCTTCTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(7-411)

PDZ domain (PDZ_6)

(210-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

48.832

100

0.492
  eeP Streptococcus thermophilus LMD-9

48.832

100

0.492

Multiple sequence alignment