Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   DV130_RS01840 Genome accession   NZ_CP031248
Coordinates   348575..349645 (-) Length   356 a.a.
NCBI ID   WP_000817882.1    Uniprot ID   Q7ZAK7
Organism   Streptococcus pneumoniae strain M26365     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 343575..354645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV130_RS01820 - 344654..345697 (+) 1044 WP_050072443.1 dihydrolipoamide acetyltransferase -
  DV130_RS01825 lpdA 345743..347446 (+) 1704 WP_001162912.1 dihydrolipoyl dehydrogenase -
  DV130_RS12330 - 347510..348500 (+) 991 Protein_358 lipoate--protein ligase -
  DV130_RS01840 xerS 348575..349645 (-) 1071 WP_000817882.1 tyrosine recombinase XerS Machinery gene
  DV130_RS01845 - 350139..351689 (-) 1551 WP_050072441.1 ClC family H(+)/Cl(-) exchange transporter -
  DV130_RS01850 - 351705..352484 (-) 780 WP_050072440.1 ribonuclease HII -
  DV130_RS01855 ylqF 352471..353322 (-) 852 WP_000201286.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41171.21 Da        Isoelectric Point: 9.6220

>NTDB_id=263345 DV130_RS01840 WP_000817882.1 348575..349645(-) (xerS) [Streptococcus pneumoniae strain M26365]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=263345 DV130_RS01840 WP_000817882.1 348575..349645(-) (xerS) [Streptococcus pneumoniae strain M26365]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAACTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTACGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCTACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7ZAK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

100

100

1