Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   C0674_RS08670 Genome accession   NZ_CP025688
Coordinates   1849647..1851347 (-) Length   566 a.a.
NCBI ID   WP_028976396.1    Uniprot ID   -
Organism   Sporolactobacillus terrae strain DLG3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1844647..1856347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0674_RS08655 (C0674_08805) - 1845086..1846396 (+) 1311 WP_028977669.1 IS1380 family transposase -
  C0674_RS08660 (C0674_08810) spo0A 1847232..1848041 (-) 810 WP_037563070.1 sporulation transcription factor Spo0A -
  C0674_RS08665 (C0674_08815) spoIVB 1848231..1849514 (-) 1284 WP_028976395.1 SpoIVB peptidase -
  C0674_RS08670 (C0674_08820) recN 1849647..1851347 (-) 1701 WP_028976396.1 DNA repair protein RecN Machinery gene
  C0674_RS08675 (C0674_08825) - 1851438..1852280 (-) 843 WP_223362588.1 TlyA family RNA methyltransferase -
  C0674_RS08680 (C0674_08830) dxs 1852274..1854190 (-) 1917 WP_028976398.1 1-deoxy-D-xylulose-5-phosphate synthase -
  C0674_RS08685 (C0674_08835) - 1854197..1854826 (-) 630 WP_028976399.1 hypothetical protein -
  C0674_RS08690 (C0674_08840) - 1854944..1855210 (-) 267 WP_028976400.1 hypothetical protein -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63769.30 Da        Isoelectric Point: 5.4034

>NTDB_id=263318 C0674_RS08670 WP_028976396.1 1849647..1851347(-) (recN) [Sporolactobacillus terrae strain DLG3]
MLTELQIINFAIIDKLNVSFEDGLTVFTGETGAGKSIIIDAIALLGGARGSADYVRHGAKKAELEALFDIENNERVIQLL
DQLGLDHTDDQLILRRDIAHTGKSVCRVNGKLVTQSVLQQFGTLLIDIHGQHEHQRLLDPSKHLDFVDRFGGSTIEKLKQ
AYTEEYQKATKLAAQCSRYNQDEKEVAQRVDLLHYQIKDIEAGHLQKDEEEQLLEEKRKLLNYEKVFQTLKSSYGALDGE
HAALDLLRQTASGLDSIRDLDPELNHFSESVSNCFYLLEEQASSIRNYLEQMEYNPERLNEIEARLNEIQLLKRKYGNNV
DEILTYYVQIKKELDDLNSRDQNFDALHEALKAEIGVLRDCAVQLSRARKQTSGKLARAINHEFKDLCMEHALIDLHVKM
NGNLESFSGFSSEGIDHVSFYITTNPGEPFKPLAKVASGGELSRVMLAMKTVFRKVIGPVTIVFDEVDTGVSGQAAQAMA
EKISSLSQNAQVFCITHLPQVAAMADQHISIEKYVTKDERTHTHVKTLDDAEKVQEISRMISGPLMTDLAREHAKELIQL
AEKIKQ

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=263318 C0674_RS08670 WP_028976396.1 1849647..1851347(-) (recN) [Sporolactobacillus terrae strain DLG3]
GTGCTAACAGAACTTCAAATTATAAATTTTGCAATTATAGACAAACTGAATGTGTCTTTTGAAGACGGACTGACTGTATT
TACTGGTGAAACCGGTGCGGGAAAGTCAATCATTATTGATGCCATTGCCTTGCTTGGCGGGGCACGCGGCTCAGCTGATT
ATGTCCGGCATGGTGCAAAAAAGGCTGAGCTTGAGGCGTTATTTGATATCGAAAATAATGAGCGGGTCATTCAATTGCTT
GATCAGTTAGGTTTAGATCACACCGATGACCAGTTAATCCTCAGGCGCGATATCGCACATACTGGGAAAAGTGTCTGTCG
TGTCAACGGCAAGCTCGTGACTCAGTCCGTTCTGCAGCAGTTCGGTACGCTTCTGATCGACATTCATGGGCAGCACGAAC
ATCAGCGCCTTCTCGATCCTTCGAAACATCTCGACTTTGTTGATCGATTTGGAGGGTCGACTATTGAAAAGCTGAAGCAG
GCTTATACAGAAGAATATCAAAAAGCAACGAAGCTTGCCGCTCAATGCAGCCGCTATAATCAGGACGAAAAAGAAGTAGC
ACAGCGAGTCGATTTGCTTCACTACCAGATAAAGGATATTGAAGCCGGTCATCTGCAGAAAGATGAAGAGGAACAGCTGC
TCGAGGAAAAAAGAAAGCTGTTGAATTATGAAAAAGTATTTCAAACGCTTAAATCCAGCTATGGCGCACTTGATGGTGAA
CATGCGGCCTTGGATCTGCTTCGTCAAACCGCTTCCGGCCTTGACTCGATTCGCGATCTCGACCCTGAGCTGAATCATTT
TTCTGAGTCTGTCTCGAATTGTTTCTATCTGCTTGAAGAGCAAGCCTCATCGATCCGCAATTATTTGGAGCAGATGGAAT
ATAATCCGGAACGGCTGAATGAAATTGAAGCACGCTTAAATGAAATTCAGCTTTTGAAAAGGAAATACGGAAATAATGTG
GACGAAATTTTAACTTATTATGTGCAAATAAAAAAAGAACTCGATGACTTGAATTCACGCGACCAAAATTTCGATGCCCT
GCATGAAGCATTGAAAGCTGAAATTGGCGTATTGAGAGACTGTGCCGTTCAATTATCCAGAGCGCGAAAACAAACAAGCG
GGAAACTGGCGCGTGCCATTAATCATGAGTTTAAAGATCTGTGTATGGAGCATGCTTTGATTGATCTTCACGTGAAGATG
AATGGTAATCTTGAGTCATTTTCCGGATTCAGTTCAGAAGGCATTGATCATGTTTCCTTTTATATAACCACCAATCCTGG
TGAACCATTCAAACCGCTGGCAAAGGTTGCCTCAGGTGGCGAGCTTTCACGAGTTATGCTTGCAATGAAGACGGTGTTCA
GAAAAGTGATTGGTCCGGTAACCATTGTCTTTGATGAGGTGGACACTGGGGTCAGCGGCCAAGCAGCACAAGCCATGGCG
GAGAAAATCAGTTCGCTTTCTCAAAACGCGCAAGTATTTTGTATTACCCATCTCCCTCAAGTTGCAGCCATGGCCGACCA
GCATATCTCTATTGAAAAATACGTGACTAAAGATGAACGTACCCATACGCATGTCAAAACGTTGGATGACGCTGAAAAAG
TACAAGAAATTAGCAGAATGATTTCGGGTCCGTTGATGACTGATCTTGCTCGGGAACACGCAAAAGAACTTATTCAATTG
GCGGAAAAAATCAAACAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.873

100

0.498

Multiple sequence alignment