Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DV129_RS07590 Genome accession   NZ_CP031247
Coordinates   1413576..1414346 (-) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain M23734     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1408576..1419346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV129_RS07565 comA 1408711..1410864 (-) 2154 WP_114865983.1 peptide cleavage/export ABC transporter ComA Regulator
  DV129_RS12535 - 1411451..1411576 (-) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  DV129_RS07570 blpU 1411579..1411809 (-) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  DV129_RS07575 - 1412012..1412302 (-) 291 Protein_1432 IS5/IS1182 family transposase -
  DV129_RS07580 - 1412348..1412581 (-) 234 WP_000136447.1 acyl carrier protein -
  DV129_RS07585 plsX 1412587..1413579 (-) 993 WP_000717461.1 phosphate acyltransferase PlsX -
  DV129_RS07590 recO 1413576..1414346 (-) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  DV129_RS07595 - 1414343..1415512 (-) 1170 WP_000366352.1 pyridoxal phosphate-dependent aminotransferase -
  DV129_RS07600 - 1415661..1416671 (+) 1011 WP_000009173.1 YeiH family protein -
  DV129_RS12320 - 1416700..1416993 (-) 294 WP_012677093.1 hypothetical protein -
  DV129_RS07610 - 1417034..1417471 (-) 438 WP_000076480.1 CoA-binding protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=263270 DV129_RS07590 WP_000616164.1 1413576..1414346(-) (recO) [Streptococcus pneumoniae strain M23734]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=263270 DV129_RS07590 WP_000616164.1 1413576..1414346(-) (recO) [Streptococcus pneumoniae strain M23734]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992