Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   DV129_RS05040 Genome accession   NZ_CP031247
Coordinates   944500..944766 (-) Length   88 a.a.
NCBI ID   WP_001844589.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M23734     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 939500..949766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV129_RS05030 metF 941061..941927 (-) 867 WP_000089982.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  DV129_RS05035 metE 941991..944240 (-) 2250 WP_000108199.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  DV129_RS05040 HI0659 944500..944766 (-) 267 WP_001844589.1 helix-turn-helix transcriptional regulator Machinery gene
  DV129_RS05045 - 944892..945339 (-) 448 Protein_957 IS30 family transposase -
  DV129_RS05050 - 945495..946496 (+) 1002 WP_000597991.1 endonuclease/exonuclease/phosphatase family protein -
  DV129_RS05055 pheT 946564..948966 (-) 2403 WP_000909142.1 phenylalanine--tRNA ligase subunit beta -
  DV129_RS05060 - 949043..949552 (-) 510 WP_000619941.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9629.24 Da        Isoelectric Point: 5.1633

>NTDB_id=263248 DV129_RS05040 WP_001844589.1 944500..944766(-) (HI0659) [Streptococcus pneumoniae strain M23734]
MEGCPSELFSKEEILESDMRVAIMSELIEARNKQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKILAV
VRLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=263248 DV129_RS05040 WP_001844589.1 944500..944766(-) (HI0659) [Streptococcus pneumoniae strain M23734]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTAGCTATCATGAGCGAGTT
GATTGAAGCCAGAAATAAGCAAGGAATCAGTCAGAAAAAGCTAGAGGAACTCAGTGGAGTGAGTCAGCCTGTTATAGCTA
GGATGGAGACAGGTAAGACTAGTCCACAGTTGGACACAGTCTTAAAAGTCCTAGCTAGTCTAGGAAAGATACTAGCAGTC
GTCCGACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.74

87.5

0.523