Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NEUT_RS08870 Genome accession   NC_008344
Coordinates   1854538..1855887 (-) Length   449 a.a.
NCBI ID   WP_011634794.1    Uniprot ID   Q0AF94
Organism   Nitrosomonas eutropha C91     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1849538..1860887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEUT_RS08845 (Neut_1749) - 1849849..1851081 (+) 1233 WP_011634790.1 hypothetical protein -
  NEUT_RS15600 - 1851337..1851543 (+) 207 WP_049753117.1 mechanosensitive ion channel domain-containing protein -
  NEUT_RS15605 - 1851646..1851942 (+) 297 WP_340626517.1 hypothetical protein -
  NEUT_RS08855 (Neut_1751) - 1852149..1852535 (-) 387 WP_146208372.1 hypothetical protein -
  NEUT_RS08860 (Neut_1752) murI 1852636..1853442 (+) 807 WP_011634792.1 glutamate racemase -
  NEUT_RS08865 (Neut_1753) - 1853546..1854502 (+) 957 WP_011634793.1 universal stress protein -
  NEUT_RS08870 (Neut_1754) radA 1854538..1855887 (-) 1350 WP_011634794.1 DNA repair protein RadA Machinery gene
  NEUT_RS08880 (Neut_1755) - 1856326..1857507 (+) 1182 WP_011634795.1 integrase arm-type DNA-binding domain-containing protein -
  NEUT_RS15070 (Neut_1756) - 1857796..1858395 (-) 600 WP_041353533.1 IS630 family transposase -
  NEUT_RS15075 (Neut_1757) - 1858346..1858783 (-) 438 WP_011634797.1 helix-turn-helix domain-containing protein -
  NEUT_RS08895 (Neut_1758) - 1858807..1859814 (+) 1008 WP_277985859.1 DUF3987 domain-containing protein -
  NEUT_RS08905 (Neut_1759) - 1860416..1860676 (+) 261 WP_011634799.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 48884.71 Da        Isoelectric Point: 7.9360

>NTDB_id=26324 NEUT_RS08870 WP_011634794.1 1854538..1855887(-) (radA) [Nitrosomonas eutropha C91]
MTKLKTLYICSACGGQVLKWQGQCPHCREWNSLTETVREKNLPHFIPDSAQGHVLSLSEVEAEDMPRFLTGLSEFDRVLG
GGLVQGGVVLLGGDPGIGKSTLLLQALSRMSAHHRVLYVSGEESMQQVALRAKRLTLDATKVDLLTEIRLEAIQSTLVEH
RPQVAIIDSIQTIYSESLQSAPGSVAQVRECAARLTRFAKTSGTCVVLVGHVTKEGALAGPRVLEHMVDTVLYFEGDTHS
AFRLIRAFKNRFGAVNELGVFAMTEKGLREVNNPSALFLSHHGVRVPGICVMVTQEGTRPLLVEIQALVDEAHGSTPRRL
SVGLEQNRLAMLLAVLHRHAGIPCFDQDIFINAVGGVKITEPGADLAVMLAIVSSLKNRILPEKTVVFGEVGLAGEVRPV
QRGQERIKEAAKLGFTQAVIPKANQSKQVIKGIEIVTVERIEEAIRALF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=26324 NEUT_RS08870 WP_011634794.1 1854538..1855887(-) (radA) [Nitrosomonas eutropha C91]
ATGACGAAACTCAAGACTCTTTATATTTGCAGTGCCTGTGGTGGTCAGGTATTGAAATGGCAGGGCCAGTGTCCGCATTG
TCGTGAATGGAATTCGTTGACTGAAACTGTGCGGGAGAAAAATCTTCCGCATTTCATTCCGGATTCCGCGCAAGGACATG
TGCTGAGTCTGAGTGAGGTCGAGGCGGAGGATATGCCTCGTTTTCTGACCGGGCTGTCCGAGTTTGACCGGGTGTTAGGT
GGAGGCCTGGTACAGGGTGGGGTTGTTTTATTAGGAGGTGATCCCGGCATAGGTAAGTCGACACTACTGTTGCAGGCGCT
ATCCCGGATGTCTGCGCATCACCGAGTGCTATACGTCAGTGGTGAAGAGTCCATGCAACAGGTCGCGCTACGGGCAAAGC
GTCTGACTCTGGATGCCACCAAAGTTGATTTGTTGACCGAAATTCGACTGGAAGCCATTCAGTCAACGTTGGTTGAGCAT
CGCCCTCAAGTCGCAATCATTGATTCGATTCAGACGATTTATTCCGAGTCGTTGCAATCGGCCCCAGGTTCGGTTGCCCA
AGTACGGGAATGTGCCGCTCGCTTGACGCGATTCGCCAAAACCAGTGGTACTTGTGTTGTGCTGGTAGGACATGTGACCA
AAGAGGGGGCGCTGGCTGGGCCGCGTGTTCTGGAGCATATGGTTGATACAGTACTTTATTTTGAAGGAGATACACACTCC
GCTTTTCGTTTAATTCGAGCTTTCAAGAATCGTTTTGGGGCAGTGAACGAACTGGGTGTCTTTGCCATGACCGAGAAGGG
ATTGCGGGAAGTGAATAATCCTTCTGCCTTGTTTCTTTCGCATCATGGTGTGCGTGTGCCGGGTATTTGTGTGATGGTGA
CACAGGAGGGAACGCGCCCTTTGCTGGTGGAGATTCAGGCTCTGGTGGATGAGGCGCATGGATCAACCCCGCGTCGATTG
AGTGTCGGGCTGGAACAGAATCGTCTGGCAATGTTGCTGGCAGTGCTGCATCGCCATGCCGGTATTCCTTGTTTTGATCA
GGATATTTTTATCAATGCGGTGGGTGGAGTCAAAATTACTGAACCAGGCGCTGATCTGGCCGTGATGCTGGCGATTGTTT
CATCTCTGAAAAACCGGATCTTGCCGGAGAAAACTGTTGTGTTTGGAGAAGTTGGTCTAGCGGGGGAAGTACGGCCGGTA
CAACGCGGGCAGGAGCGAATTAAAGAAGCAGCCAAACTGGGATTTACTCAGGCTGTTATTCCCAAGGCAAATCAGTCTAA
ACAAGTTATCAAAGGAATTGAAATTGTTACTGTAGAGCGAATCGAAGAAGCGATTCGTGCGCTTTTCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-216)

Subunit ChlI of Mg-chelatase (ChlI)

(343-424)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0AF94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.682

100

0.481
  radA Streptococcus mitis SK321

45.815

100

0.463
  radA Streptococcus pneumoniae D39

45.695

100

0.461
  radA Streptococcus pneumoniae TIGR4

45.695

100

0.461
  radA Streptococcus mitis NCTC 12261

45.695

100

0.461
  radA Streptococcus pneumoniae R6

45.695

100

0.461
  radA Streptococcus pneumoniae Rx1

45.695

100

0.461

Multiple sequence alignment