Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C0099_RS07935 Genome accession   NZ_CP025682
Coordinates   1648027..1649409 (-) Length   460 a.a.
NCBI ID   WP_102246932.1    Uniprot ID   A0A2I6S6I3
Organism   Pseudazoarcus pumilus strain SY39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1643027..1654409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0099_RS07920 (C0099_07920) - 1644777..1645511 (+) 735 WP_102246929.1 S-methyl-5'-thioinosine phosphorylase -
  C0099_RS07925 (C0099_07925) - 1645522..1646478 (-) 957 WP_102246930.1 L-histidine N(alpha)-methyltransferase -
  C0099_RS07930 (C0099_07930) - 1646475..1647809 (-) 1335 WP_102246931.1 SUMF1/EgtB/PvdO family nonheme iron enzyme -
  C0099_RS07935 (C0099_07935) radA 1648027..1649409 (-) 1383 WP_102246932.1 DNA repair protein RadA Machinery gene
  C0099_RS07940 (C0099_07940) - 1649409..1650332 (-) 924 WP_102246933.1 LysR family transcriptional regulator -
  C0099_RS07945 (C0099_07945) - 1650426..1651175 (-) 750 WP_102248434.1 uracil-DNA glycosylase -
  C0099_RS07950 (C0099_07950) rimI 1651205..1651651 (-) 447 WP_332870256.1 ribosomal protein S18-alanine N-acetyltransferase -
  C0099_RS07955 (C0099_07955) tsaB 1651654..1652349 (-) 696 WP_102246934.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  C0099_RS07960 (C0099_07960) - 1652389..1652685 (-) 297 WP_123785226.1 hypothetical protein -
  C0099_RS07965 (C0099_07965) ompR 1653060..1653824 (+) 765 WP_102246936.1 two-component system response regulator OmpR -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49014.27 Da        Isoelectric Point: 7.0455

>NTDB_id=263225 C0099_RS07935 WP_102246932.1 1648027..1649409(-) (radA) [Pseudazoarcus pumilus strain SY39]
MARARSSFVCSDCGARTPQWQGQCPQCKAWNTLSEMPAEPSGPGAGRFASLAGGASSELTSLASLEAREEPRIPTGIGEF
DRVLGGGLVAGGVVLIGGDPGIGKSTLLLQALCALADSNPAIYVSGEESGEQVALRARRLQLEATALDLLPEIRLESILA
TLERERPRIAVIDSIQTLYSDALQSAPGSVAQVRECAAQLTRFAKTRGCSLVLVGHVTKDGALAGPRVLEHIVDTVLYFE
GDTHSSFRLVRAIKNRFGAVNELGVFAMTDRGLREVSNPSAIFLSQHERQVPGSCVLVTQEGTRPLLVEIQALVDSAHSP
NPRRLTVGLEQNRLAMLLAVLHRHAGVACFDQDVFVNAVGGVRIAEPAADLAVVLAIVSSLCSRALPRRLAAFGEIGLSG
EIRPAPRGQERLREAAKLGFTTAIIPKANAPKRALRGIEVIAVDRVDEAIERARELEEMK

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=263225 C0099_RS07935 WP_102246932.1 1648027..1649409(-) (radA) [Pseudazoarcus pumilus strain SY39]
ATGGCGCGCGCACGCAGCAGTTTCGTCTGCTCGGATTGCGGTGCTCGCACGCCGCAATGGCAGGGTCAGTGTCCGCAGTG
CAAGGCGTGGAATACGCTTTCCGAAATGCCGGCGGAACCCTCCGGACCTGGGGCAGGGCGCTTCGCCTCGCTGGCCGGTG
GGGCGTCGTCCGAACTGACTTCGCTGGCAAGTCTGGAGGCACGTGAAGAGCCGCGCATTCCGACCGGAATCGGCGAGTTC
GATCGCGTGCTGGGAGGCGGTCTGGTCGCCGGTGGCGTGGTACTCATCGGCGGCGACCCGGGCATCGGCAAGTCGACGCT
GCTGCTGCAGGCGCTTTGCGCGCTTGCGGACTCGAATCCGGCGATTTACGTCAGTGGCGAGGAGTCGGGCGAGCAGGTCG
CCTTGCGCGCACGTCGACTGCAACTGGAGGCAACTGCGCTCGATCTGTTGCCCGAGATCCGGCTCGAATCCATTCTTGCC
ACGCTCGAACGCGAGCGCCCACGCATCGCCGTAATCGATTCGATCCAGACGCTGTATTCGGATGCGCTGCAGTCCGCGCC
CGGTTCCGTCGCCCAGGTTCGTGAATGCGCGGCCCAACTCACGCGTTTCGCCAAGACACGCGGTTGCTCGCTGGTGCTTG
TCGGCCACGTCACCAAGGACGGGGCGCTGGCCGGTCCGCGCGTGCTCGAGCACATCGTCGATACCGTGCTGTACTTCGAG
GGCGACACGCACTCGAGCTTTCGCCTGGTGCGCGCGATCAAGAACCGCTTCGGCGCAGTCAATGAACTGGGCGTGTTCGC
GATGACCGACCGCGGCCTGCGCGAGGTCAGCAATCCATCGGCGATCTTCCTGTCGCAGCACGAGCGACAGGTGCCCGGAA
GCTGCGTGCTGGTGACGCAGGAGGGCACGCGTCCGCTGCTCGTCGAGATCCAGGCCTTGGTCGATTCCGCGCACAGCCCC
AATCCGCGCAGGCTCACGGTCGGCCTCGAACAGAACCGCCTGGCGATGCTGCTCGCCGTGCTGCACCGCCACGCCGGCGT
CGCATGCTTCGACCAGGACGTGTTCGTCAACGCGGTCGGTGGCGTGCGCATCGCCGAGCCGGCGGCCGACCTGGCCGTGG
TGCTCGCCATCGTCTCGTCGCTGTGCAGCCGCGCCTTGCCGCGACGGCTCGCGGCGTTTGGCGAAATCGGCTTGTCCGGC
GAGATCCGGCCAGCGCCGCGCGGACAGGAACGCCTGCGCGAGGCGGCCAAGCTCGGATTCACGACGGCCATCATCCCCAA
GGCGAATGCACCCAAGCGGGCGCTGCGTGGAATCGAGGTGATCGCTGTCGACCGCGTCGATGAAGCGATCGAGCGCGCAC
GCGAACTGGAAGAGATGAAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-221)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-453)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I6S6I3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

99.13

0.485
  radA Streptococcus mitis SK321

45.415

99.565

0.452
  radA Streptococcus mitis NCTC 12261

45.197

99.565

0.45
  radA Streptococcus pneumoniae TIGR4

45.475

98.478

0.448
  radA Streptococcus pneumoniae R6

45.475

98.478

0.448
  radA Streptococcus pneumoniae Rx1

45.475

98.478

0.448
  radA Streptococcus pneumoniae D39

45.475

98.478

0.448

Multiple sequence alignment