Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DV129_RS01790 Genome accession   NZ_CP031247
Coordinates   322181..323848 (+) Length   555 a.a.
NCBI ID   WP_000923572.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M23734     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 317181..328848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV129_RS01750 - 317364..317666 (+) 303 WP_000985093.1 bacteriocin immunity protein -
  DV129_RS01760 udk 317774..318412 (+) 639 WP_001181378.1 uridine kinase -
  DV129_RS01765 xseA 318540..319880 (+) 1341 WP_000417464.1 exodeoxyribonuclease VII large subunit -
  DV129_RS01770 - 319858..320070 (+) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  DV129_RS01775 - 320067..320942 (+) 876 WP_000743809.1 polyprenyl synthetase family protein -
  DV129_RS01780 - 320935..321750 (+) 816 WP_001041079.1 TlyA family RNA methyltransferase -
  DV129_RS01785 - 321743..322174 (+) 432 WP_001034415.1 arginine repressor -
  DV129_RS01790 recN 322181..323848 (+) 1668 WP_000923572.1 DNA repair protein RecN Machinery gene
  DV129_RS01795 - 323850..324578 (+) 729 WP_000133339.1 metallophosphoesterase family protein -
  DV129_RS01800 lepA 324657..326480 (+) 1824 WP_001047212.1 translation elongation factor 4 -
  DV129_RS12080 - 326561..326758 (-) 198 WP_000693362.1 hypothetical protein -
  DV129_RS01810 - 326938..327414 (+) 477 WP_000242188.1 PTS sugar transporter subunit IIA -
  DV129_RS01815 - 327452..327754 (+) 303 WP_000590559.1 PTS sugar transporter subunit IIB -
  DV129_RS01820 - 327762..328566 (+) 805 WP_114865960.1 IS5 family transposase -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62818.26 Da        Isoelectric Point: 4.6232

>NTDB_id=263224 DV129_RS01790 WP_000923572.1 322181..323848(+) (recN) [Streptococcus pneumoniae strain M23734]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QYGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=263224 DV129_RS01790 WP_000923572.1 322181..323848(+) (recN) [Streptococcus pneumoniae strain M23734]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGTATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACAGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44