Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | C0099_RS04850 | Genome accession | NZ_CP025682 |
| Coordinates | 1009396..1010544 (+) | Length | 382 a.a. |
| NCBI ID | WP_102246395.1 | Uniprot ID | - |
| Organism | Pseudazoarcus pumilus strain SY39 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1004396..1015544
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0099_RS04825 (C0099_04825) | - | 1005231..1005485 (-) | 255 | WP_102246390.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| C0099_RS04830 (C0099_04830) | coaD | 1005511..1006005 (-) | 495 | WP_102246391.1 | pantetheine-phosphate adenylyltransferase | - |
| C0099_RS04835 (C0099_04835) | rsmD | 1006002..1006541 (-) | 540 | WP_102246392.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| C0099_RS04840 (C0099_04840) | - | 1006538..1007869 (-) | 1332 | WP_102246393.1 | pitrilysin family protein | - |
| C0099_RS04845 (C0099_04845) | - | 1007866..1009254 (-) | 1389 | WP_102246394.1 | pitrilysin family protein | - |
| C0099_RS04850 (C0099_04850) | pilA | 1009396..1010544 (+) | 1149 | WP_102246395.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| C0099_RS04855 (C0099_04855) | - | 1010541..1011206 (+) | 666 | WP_102246396.1 | cell division ATP-binding protein FtsE | - |
| C0099_RS04860 (C0099_04860) | ftsX | 1011203..1012105 (+) | 903 | WP_102246397.1 | permease-like cell division protein FtsX | - |
| C0099_RS04865 (C0099_04865) | - | 1012292..1013077 (-) | 786 | WP_102246398.1 | ion transporter | - |
| C0099_RS04870 (C0099_04870) | tadA | 1013232..1013699 (+) | 468 | WP_102246399.1 | tRNA adenosine(34) deaminase TadA | - |
| C0099_RS04875 (C0099_04875) | - | 1013701..1014180 (+) | 480 | WP_102246400.1 | L,D-transpeptidase | - |
| C0099_RS04880 (C0099_04880) | - | 1014173..1014619 (+) | 447 | WP_102246401.1 | GNAT family N-acetyltransferase | - |
| C0099_RS04885 (C0099_04885) | - | 1014621..1015382 (-) | 762 | WP_102246402.1 | NRDE family protein | - |
Sequence
Protein
Download Length: 382 a.a. Molecular weight: 40369.94 Da Isoelectric Point: 4.9039
>NTDB_id=263221 C0099_RS04850 WP_102246395.1 1009396..1010544(+) (pilA) [Pseudazoarcus pumilus strain SY39]
MFGFLKKSRKPEPEPESASPVDAASDTPETEALAAETRPSADASPALVPEAAAESQADPAVEPQPTTSEVQAPAPVEAAR
PSWGERLRAGLSRTRGGLAGLFGLRKIDEELLEDLETTLLMADCGVEATQYLTDALRARWKRDRLETADQLRDALAELMA
DLLAPLEAPLDVSAHQPFIVMIAGVNGAGKTTSIGKLAKYFQAQGRSVLLAAGDTFRAAAREQLETWGARNNVTVIAQDK
GDSAAVIFDAVNAARARGIDVVLADTAGRLPTQLHLMEEIAKVRRVIAKAEASAPHEVLLVLDANIGQNALAQVKAFDAA
IGVSGLVLTKLDGTAKGGIVAAIARQHPKPLRFIGVGEGIDDLRPFAAREFVDALFARGSVK
MFGFLKKSRKPEPEPESASPVDAASDTPETEALAAETRPSADASPALVPEAAAESQADPAVEPQPTTSEVQAPAPVEAAR
PSWGERLRAGLSRTRGGLAGLFGLRKIDEELLEDLETTLLMADCGVEATQYLTDALRARWKRDRLETADQLRDALAELMA
DLLAPLEAPLDVSAHQPFIVMIAGVNGAGKTTSIGKLAKYFQAQGRSVLLAAGDTFRAAAREQLETWGARNNVTVIAQDK
GDSAAVIFDAVNAARARGIDVVLADTAGRLPTQLHLMEEIAKVRRVIAKAEASAPHEVLLVLDANIGQNALAQVKAFDAA
IGVSGLVLTKLDGTAKGGIVAAIARQHPKPLRFIGVGEGIDDLRPFAAREFVDALFARGSVK
Nucleotide
Download Length: 1149 bp
>NTDB_id=263221 C0099_RS04850 WP_102246395.1 1009396..1010544(+) (pilA) [Pseudazoarcus pumilus strain SY39]
ATGTTTGGTTTCCTGAAGAAGTCCCGCAAGCCCGAGCCCGAGCCCGAGTCCGCGTCACCGGTCGACGCTGCGTCCGACAC
TCCCGAGACGGAGGCGCTCGCGGCCGAAACGCGGCCGTCGGCCGACGCTTCACCAGCGTTGGTGCCCGAGGCTGCAGCCG
AGTCGCAGGCGGATCCGGCAGTCGAACCGCAACCGACGACATCCGAGGTGCAGGCACCGGCGCCGGTCGAGGCCGCCCGG
CCGTCCTGGGGCGAGCGCCTGCGTGCCGGGCTGTCGCGCACGCGCGGCGGGCTCGCCGGGCTGTTCGGTCTGCGCAAGAT
CGACGAGGAACTGCTCGAGGATCTGGAAACGACGCTTCTGATGGCCGACTGCGGCGTGGAAGCCACGCAATACCTGACCG
ATGCGCTGCGCGCGCGCTGGAAGCGCGACCGGCTCGAAACCGCCGACCAGTTGCGCGATGCGCTCGCCGAGCTGATGGCG
GATCTGCTCGCACCGCTGGAGGCGCCGCTCGACGTCTCTGCCCATCAGCCCTTCATCGTCATGATCGCCGGCGTCAATGG
CGCCGGCAAGACGACTTCCATCGGCAAGCTCGCCAAATATTTCCAGGCGCAGGGGCGCAGCGTGCTGCTGGCTGCCGGCG
ACACCTTCCGCGCCGCGGCGCGCGAACAGCTCGAGACCTGGGGGGCGCGCAACAACGTCACCGTGATCGCGCAGGACAAG
GGCGACTCGGCCGCGGTGATCTTCGACGCGGTCAATGCGGCGCGTGCGCGCGGCATCGACGTCGTGCTGGCCGACACGGC
CGGGCGCCTGCCCACGCAGCTGCACCTGATGGAAGAGATCGCCAAGGTGCGCCGCGTCATCGCCAAGGCCGAGGCGAGTG
CGCCGCACGAGGTGCTGCTGGTGCTCGACGCCAACATCGGCCAGAACGCGCTGGCGCAGGTCAAGGCCTTCGATGCGGCC
ATCGGCGTGAGTGGCCTGGTGCTGACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCGCGGCGATCGCGCGCCAGCA
TCCCAAGCCGCTGCGCTTCATCGGCGTGGGCGAGGGCATCGACGACCTGCGCCCCTTCGCTGCGCGCGAATTCGTCGACG
CGCTGTTCGCGCGCGGCTCCGTCAAATGA
ATGTTTGGTTTCCTGAAGAAGTCCCGCAAGCCCGAGCCCGAGCCCGAGTCCGCGTCACCGGTCGACGCTGCGTCCGACAC
TCCCGAGACGGAGGCGCTCGCGGCCGAAACGCGGCCGTCGGCCGACGCTTCACCAGCGTTGGTGCCCGAGGCTGCAGCCG
AGTCGCAGGCGGATCCGGCAGTCGAACCGCAACCGACGACATCCGAGGTGCAGGCACCGGCGCCGGTCGAGGCCGCCCGG
CCGTCCTGGGGCGAGCGCCTGCGTGCCGGGCTGTCGCGCACGCGCGGCGGGCTCGCCGGGCTGTTCGGTCTGCGCAAGAT
CGACGAGGAACTGCTCGAGGATCTGGAAACGACGCTTCTGATGGCCGACTGCGGCGTGGAAGCCACGCAATACCTGACCG
ATGCGCTGCGCGCGCGCTGGAAGCGCGACCGGCTCGAAACCGCCGACCAGTTGCGCGATGCGCTCGCCGAGCTGATGGCG
GATCTGCTCGCACCGCTGGAGGCGCCGCTCGACGTCTCTGCCCATCAGCCCTTCATCGTCATGATCGCCGGCGTCAATGG
CGCCGGCAAGACGACTTCCATCGGCAAGCTCGCCAAATATTTCCAGGCGCAGGGGCGCAGCGTGCTGCTGGCTGCCGGCG
ACACCTTCCGCGCCGCGGCGCGCGAACAGCTCGAGACCTGGGGGGCGCGCAACAACGTCACCGTGATCGCGCAGGACAAG
GGCGACTCGGCCGCGGTGATCTTCGACGCGGTCAATGCGGCGCGTGCGCGCGGCATCGACGTCGTGCTGGCCGACACGGC
CGGGCGCCTGCCCACGCAGCTGCACCTGATGGAAGAGATCGCCAAGGTGCGCCGCGTCATCGCCAAGGCCGAGGCGAGTG
CGCCGCACGAGGTGCTGCTGGTGCTCGACGCCAACATCGGCCAGAACGCGCTGGCGCAGGTCAAGGCCTTCGATGCGGCC
ATCGGCGTGAGTGGCCTGGTGCTGACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCGCGGCGATCGCGCGCCAGCA
TCCCAAGCCGCTGCGCTTCATCGGCGTGGGCGAGGGCATCGACGACCTGCGCCCCTTCGCTGCGCGCGAATTCGTCGACG
CGCTGTTCGCGCGCGGCTCCGTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
60.933 |
89.791 |
0.547 |