Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NEUT_RS07745 Genome accession   NC_008344
Coordinates   1598589..1599587 (-) Length   332 a.a.
NCBI ID   WP_041353784.1    Uniprot ID   -
Organism   Nitrosomonas eutropha C91     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1593589..1604587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEUT_RS14020 - 1593821..1594617 (+) 797 Protein_1540 IS5 family transposase -
  NEUT_RS07720 (Neut_1524) - 1594686..1595675 (+) 990 WP_049753111.1 IS481 family transposase -
  NEUT_RS07725 (Neut_1525) ispD 1595719..1596420 (-) 702 WP_011634575.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NEUT_RS07730 (Neut_1526) - 1596488..1596928 (+) 441 WP_011634576.1 CBS domain-containing protein -
  NEUT_RS07735 (Neut_1527) ftsX 1596983..1597903 (-) 921 WP_011634577.1 permease-like cell division protein FtsX -
  NEUT_RS07740 (Neut_1528) - 1597900..1598553 (-) 654 WP_041353514.1 ATP-binding cassette domain-containing protein -
  NEUT_RS07745 (Neut_1529) pilA 1598589..1599587 (-) 999 WP_041353784.1 signal recognition particle-docking protein FtsY Machinery gene
  NEUT_RS07750 (Neut_1530) - 1599693..1601084 (+) 1392 WP_011634580.1 pitrilysin family protein -
  NEUT_RS07755 (Neut_1531) alr 1601211..1602296 (+) 1086 WP_011634581.1 alanine racemase -
  NEUT_RS07760 (Neut_1532) - 1602325..1603119 (-) 795 WP_011634582.1 peptidyl-prolyl cis-trans isomerase -
  NEUT_RS07765 (Neut_1533) - 1603293..1603595 (-) 303 WP_011634583.1 YciI family protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36071.39 Da        Isoelectric Point: 7.4697

>NTDB_id=26322 NEUT_RS07745 WP_041353784.1 1598589..1599587(-) (pilA) [Nitrosomonas eutropha C91]
MFSIFKSKKNSDEKNPARIEVESVSFADKIRQGLTRTRQQFGKQLSGLFGGRKIDEDLYEELETALLTADTGIQATNRLL
ESLRTRVKRDALDDSKQLKTALQDALTELLQPLERPLVTTGHKPFVIMIAGVNGVGKTTTIGKLAHYFQSQGHSVLLAAG
DTFRAAAQEQLKIWGERNQITVISQESDPGKKGDPAAVIFDAVNAAIARKIDIVLADTAGRLTTQLHLMEEIKKIKRVVA
KAIPDAPHEVLLVLDANTGQNAVSQLKAFNDALGVTGLVMTKLDGTAKGGVIAAIAAQFVDNPLALRFIGMGEGLDDLRP
FNAREFAEALFD

Nucleotide


Download         Length: 999 bp        

>NTDB_id=26322 NEUT_RS07745 WP_041353784.1 1598589..1599587(-) (pilA) [Nitrosomonas eutropha C91]
ATGTTTAGCATTTTTAAATCCAAAAAGAACTCTGACGAAAAAAATCCTGCTCGGATTGAAGTCGAGTCAGTCAGTTTCGC
CGATAAGATCAGGCAGGGCCTGACACGCACACGACAGCAGTTTGGCAAGCAGTTGTCCGGGTTGTTTGGGGGCAGGAAAA
TCGATGAAGATCTGTATGAGGAACTTGAGACCGCTTTATTGACAGCAGATACTGGAATCCAGGCGACAAACCGGTTGCTG
GAATCACTGCGTACCCGCGTTAAGCGTGATGCACTGGACGATTCAAAACAACTTAAAACAGCCTTACAGGATGCACTGAC
TGAACTACTGCAGCCGTTGGAGCGACCACTGGTTACAACTGGGCATAAACCCTTCGTGATCATGATTGCTGGCGTAAACG
GTGTTGGTAAAACTACCACCATCGGTAAGCTTGCTCATTATTTCCAGTCACAGGGACATTCGGTGTTGCTGGCGGCTGGC
GATACTTTTCGCGCGGCAGCACAGGAGCAACTTAAAATATGGGGCGAGCGCAACCAGATCACAGTTATTTCCCAGGAAAG
TGATCCGGGCAAAAAAGGTGATCCGGCCGCTGTGATTTTCGATGCAGTCAATGCAGCTATTGCAAGAAAAATAGATATCG
TTCTGGCCGATACCGCTGGGCGCCTAACTACCCAGCTCCATTTGATGGAAGAAATCAAGAAAATCAAGCGCGTCGTTGCC
AAAGCCATACCTGATGCACCGCACGAGGTACTGCTGGTGCTGGATGCGAATACTGGTCAAAACGCTGTCAGTCAGTTAAA
GGCCTTCAATGATGCTCTGGGTGTTACTGGATTGGTCATGACTAAGCTGGATGGAACTGCCAAGGGCGGAGTAATTGCTG
CCATTGCTGCACAATTTGTCGATAATCCGCTCGCCCTACGTTTTATAGGGATGGGGGAAGGGCTGGATGATTTAAGGCCT
TTCAATGCCCGGGAATTTGCAGAAGCACTGTTCGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(42-106)

SRP54-type protein, GTPase domain (SRP54)

(124-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

62.461

95.482

0.596

Multiple sequence alignment