Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DV131_RS08860 Genome accession   NZ_CP031246
Coordinates   1663687..1665354 (-) Length   555 a.a.
NCBI ID   WP_114865929.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M26368     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1658687..1670354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV131_RS08830 - 1658954..1659773 (-) 820 Protein_1643 IS5 family transposase -
  DV131_RS08835 - 1659781..1660083 (-) 303 WP_114865928.1 PTS sugar transporter subunit IIB -
  DV131_RS08840 - 1660121..1660597 (-) 477 Protein_1645 PTS sugar transporter subunit IIA -
  DV131_RS11975 - 1660777..1660974 (+) 198 WP_050091635.1 hypothetical protein -
  DV131_RS08850 lepA 1661055..1662878 (-) 1824 WP_001047216.1 translation elongation factor 4 -
  DV131_RS08855 - 1662957..1663685 (-) 729 WP_000133333.1 metallophosphoesterase family protein -
  DV131_RS08860 recN 1663687..1665354 (-) 1668 WP_114865929.1 DNA repair protein RecN Machinery gene
  DV131_RS08865 - 1665361..1665792 (-) 432 WP_001034412.1 arginine repressor -
  DV131_RS08870 - 1665785..1666600 (-) 816 WP_001041073.1 TlyA family RNA methyltransferase -
  DV131_RS08875 - 1666593..1667468 (-) 876 WP_000743831.1 polyprenyl synthetase family protein -
  DV131_RS08880 - 1667465..1667677 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  DV131_RS08885 xseA 1667655..1668995 (-) 1341 WP_000417502.1 exodeoxyribonuclease VII large subunit -
  DV131_RS08890 udk 1669123..1669761 (-) 639 WP_001181378.1 uridine kinase -
  DV131_RS08900 - 1669869..1670171 (-) 303 WP_000985093.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62692.15 Da        Isoelectric Point: 4.6753

>NTDB_id=263186 DV131_RS08860 WP_114865929.1 1663687..1665354(-) (recN) [Streptococcus pneumoniae strain M26368]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNKMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLGNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=263186 DV131_RS08860 WP_114865929.1 1663687..1665354(-) (recN) [Streptococcus pneumoniae strain M26368]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGCCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATAAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGGGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.034

100

0.44

Multiple sequence alignment