Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SSA_RS08515 Genome accession   NC_009009
Coordinates   1742087..1742800 (+) Length   237 a.a.
NCBI ID   WP_033179202.1    Uniprot ID   -
Organism   Streptococcus sanguinis SK36     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1737087..1747800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS08505 (SSA_1751) treC 1738200..1739831 (-) 1632 WP_033179200.1 alpha,alpha-phosphotrehalase -
  SSA_RS08510 (SSA_1752) treP 1739902..1741899 (-) 1998 WP_033179201.1 PTS system trehalose-specific EIIBC component -
  SSA_RS08515 (SSA_1753) treR 1742087..1742800 (+) 714 WP_033179202.1 trehalose operon repressor Regulator
  SSA_RS08520 (SSA_1754) - 1743215..1743556 (-) 342 WP_223311173.1 hypothetical protein -
  SSA_RS08525 (SSA_1755) - 1743565..1743858 (-) 294 WP_011837335.1 hypothetical protein -
  SSA_RS08530 (SSA_1756) - 1743867..1745381 (-) 1515 WP_011837336.1 hypothetical protein -
  SSA_RS08535 (SSA_1757) - 1745372..1745980 (-) 609 WP_011837337.1 hypothetical protein -
  SSA_RS08540 (SSA_1758) - 1746101..1746709 (-) 609 WP_011837338.1 hypothetical protein -
  SSA_RS11900 - 1746754..1747362 (-) 609 Protein_1665 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27828.75 Da        Isoelectric Point: 7.3925

>NTDB_id=26315 SSA_RS08515 WP_033179202.1 1742087..1742800(+) (treR) [Streptococcus sanguinis SK36]
MKKYKQLFKQIEKDILDERYAVGDFLPSEHQLTEDYQVSRDTVRKALALLQEEGLIEKVRGQGSKVIKHEQFDFPVSKLT
SYQEVVKQNNMQSKTNVVSLEKITVDQKLSDITGFLPYRLVWRIVRQRVVDQVASVLDIDYLDKGIVPDLTREIAEQSIY
AYLENDLKLNIDYAKKEFTIDHANDRDKILMDLGKDQQVVSVKSQVYLADGRQFQYTESRHKLDKFRFVDFAKRQKE

Nucleotide


Download         Length: 714 bp        

>NTDB_id=26315 SSA_RS08515 WP_033179202.1 1742087..1742800(+) (treR) [Streptococcus sanguinis SK36]
ATGAAGAAATATAAACAATTATTCAAACAAATTGAGAAAGATATTTTAGACGAGCGTTATGCAGTCGGGGACTTCTTGCC
CAGCGAACACCAGCTGACAGAAGACTACCAGGTCAGCCGCGACACTGTTCGCAAGGCTCTGGCGCTGCTGCAAGAAGAAG
GATTGATTGAAAAAGTCCGCGGACAGGGTTCCAAAGTCATCAAGCATGAACAGTTTGACTTTCCTGTGTCTAAGCTGACC
AGCTATCAAGAAGTAGTCAAGCAGAATAATATGCAGTCCAAAACCAATGTTGTCAGCTTGGAAAAGATTACCGTAGATCA
GAAACTGTCCGACATCACTGGCTTCCTTCCCTACCGACTAGTTTGGCGAATCGTCCGTCAGCGCGTTGTAGACCAAGTCG
CCTCTGTATTAGATATTGACTATTTAGACAAGGGCATCGTCCCTGACTTGACAAGGGAAATCGCTGAGCAGTCCATTTAT
GCCTATTTGGAAAATGATTTAAAGCTCAATATCGATTATGCCAAGAAGGAATTTACCATTGACCACGCCAATGACCGAGA
CAAGATTCTCATGGACCTAGGCAAGGACCAGCAAGTCGTCTCTGTAAAGTCTCAGGTCTATCTGGCAGACGGCCGCCAGT
TTCAATATACTGAGAGCCGGCACAAGCTAGACAAATTTCGCTTTGTGGATTTTGCTAAGCGTCAGAAAGAATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.916

100

0.599

Multiple sequence alignment