Detailed information
Bioinformatically predicted
Overview
| Name | tonB2 | Type | Machinery gene |
| Locus tag | C0119_RS02690 | Genome accession | NZ_CP025618 |
| Coordinates | 534299..535162 (+) | Length | 287 a.a. |
| NCBI ID | WP_193759969.1 | Uniprot ID | - |
| Organism | Acinetobacter schindleri strain SGAir0122 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 505897..535792 | 534299..535162 | within | 0 |
Gene organization within MGE regions
Location: 505897..535792
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0119_RS02500 (C0119_04915) | - | 506816..507388 (+) | 573 | Protein_479 | HfaB protein | - |
| C0119_RS02505 (C0119_04910) | - | 507472..507876 (+) | 405 | Protein_480 | hypothetical protein | - |
| C0119_RS02515 (C0119_04900) | - | 509072..509308 (+) | 237 | WP_009499586.1 | glutaredoxin | - |
| C0119_RS02520 (C0119_04895) | msrB | 509340..509780 (+) | 441 | WP_000483554.1 | peptide-methionine (R)-S-oxide reductase MsrB | - |
| C0119_RS02525 (C0119_04890) | - | 509802..510047 (+) | 246 | WP_025467194.1 | glutaredoxin family protein | - |
| C0119_RS02530 (C0119_04885) | - | 510098..510406 (+) | 309 | WP_002122973.1 | antibiotic biosynthesis monooxygenase family protein | - |
| C0119_RS02535 (C0119_04880) | - | 510403..511677 (+) | 1275 | WP_000857678.1 | acetyl-CoA C-acetyltransferase | - |
| C0119_RS02540 (C0119_04875) | - | 511687..512349 (+) | 663 | WP_001281573.1 | peptide-methionine (S)-S-oxide reductase MsrA | - |
| C0119_RS02545 (C0119_04870) | - | 512569..513546 (-) | 978 | WP_002119794.1 | sensor domain-containing diguanylate cyclase | - |
| C0119_RS02550 (C0119_04865) | - | 514164..514412 (-) | 249 | WP_228256261.1 | hypothetical protein | - |
| C0119_RS02555 (C0119_04860) | - | 514546..515247 (+) | 702 | WP_005005861.1 | IS1 family transposase | - |
| C0119_RS02560 (C0119_04855) | - | 515276..515497 (-) | 222 | Protein_491 | IS4 family transposase | - |
| C0119_RS02565 (C0119_04850) | sdhC | 515594..515968 (+) | 375 | WP_005005993.1 | succinate dehydrogenase, cytochrome b556 subunit | - |
| C0119_RS02575 (C0119_04840) | - | 516829..517095 (-) | 267 | WP_108675536.1 | hypothetical protein | - |
| C0119_RS02580 (C0119_04835) | - | 517265..517546 (-) | 282 | WP_003464986.1 | DUF427 domain-containing protein | - |
| C0119_RS02585 (C0119_04830) | grxC | 517614..517886 (-) | 273 | WP_005005995.1 | glutaredoxin 3 | - |
| C0119_RS02590 (C0119_04825) | - | 518340..519086 (-) | 747 | WP_002118292.1 | ferredoxin reductase | - |
| C0119_RS02595 (C0119_04820) | - | 519079..519681 (-) | 603 | WP_003464980.1 | sulfite oxidase-like oxidoreductase | - |
| C0119_RS16140 | - | 519838..519963 (-) | 126 | WP_256380712.1 | hypothetical protein | - |
| C0119_RS02600 (C0119_04815) | - | 520149..520619 (+) | 471 | WP_003464979.1 | TlpA family protein disulfide reductase | - |
| C0119_RS02610 (C0119_04805) | - | 520945..521238 (-) | 294 | WP_010591688.1 | DUF1330 domain-containing protein | - |
| C0119_RS02615 (C0119_04800) | - | 521297..521728 (-) | 432 | WP_005006001.1 | GlcG/HbpS family heme-binding protein | - |
| C0119_RS02620 (C0119_04795) | - | 521801..522814 (-) | 1014 | WP_002118279.1 | zinc-binding alcohol dehydrogenase family protein | - |
| C0119_RS15900 | - | 522890..523057 (+) | 168 | WP_016487060.1 | hypothetical protein | - |
| C0119_RS02625 (C0119_04790) | - | 523260..524228 (-) | 969 | WP_002118270.1 | magnesium and cobalt transport protein CorA | - |
| C0119_RS02630 (C0119_04785) | - | 524225..524929 (-) | 705 | WP_005006007.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| C0119_RS02635 (C0119_04780) | msrA | 525070..525609 (-) | 540 | WP_023294902.1 | peptide-methionine (S)-S-oxide reductase MsrA | - |
| C0119_RS02640 (C0119_04775) | msrB | 525611..526054 (-) | 444 | WP_003464965.1 | peptide-methionine (R)-S-oxide reductase MsrB | - |
| C0119_RS02645 (C0119_04770) | istB | 526576..527334 (-) | 759 | WP_074964445.1 | IS21-like element ISPst3 family helper ATPase IstB | - |
| C0119_RS02650 (C0119_04765) | - | 527425..528590 (+) | 1166 | WP_085944217.1 | IS3-like element ISAba22 family transposase | - |
| C0119_RS02660 (C0119_04755) | gorA | 528669..530021 (+) | 1353 | WP_108675535.1 | glutathione-disulfide reductase | - |
| C0119_RS02665 (C0119_04750) | - | 530160..531250 (+) | 1091 | WP_108675323.1 | IS4-like element ISAba1 family transposase | - |
| C0119_RS02670 (C0119_04745) | - | 531254..531550 (+) | 297 | WP_228256262.1 | hypothetical protein | - |
| C0119_RS02675 (C0119_04740) | - | 531811..532386 (-) | 576 | WP_004809732.1 | xanthine phosphoribosyltransferase | - |
| C0119_RS02680 (C0119_04735) | - | 532477..533190 (-) | 714 | WP_008304307.1 | DUF3108 domain-containing protein | - |
| C0119_RS02685 (C0119_04730) | - | 533342..534031 (-) | 690 | WP_048881840.1 | hypothetical protein | - |
| C0119_RS02690 (C0119_04725) | tonB2 | 534299..535162 (+) | 864 | WP_193759969.1 | energy transducer TonB | Machinery gene |
| C0119_RS02695 (C0119_04720) | - | 535172..535792 (-) | 621 | WP_005223311.1 | DUF3841 domain-containing protein | - |
Sequence
Protein
Download Length: 287 a.a. Molecular weight: 32744.30 Da Isoelectric Point: 9.2489
>NTDB_id=263049 C0119_RS02690 WP_193759969.1 534299..535162(+) (tonB2) [Acinetobacter schindleri strain SGAir0122]
MPLVKSWWKDPIFSSAVGIAALLHIMILMLQFGMPSEQDTSTKEIAVSLRISNDKIEHADFLAQTDQQGSGQFREAHRMS
SDAPLPMPDQAAGKEAMLQNSQDMLQQKQELSFEEKVLMTTLSWQKQAEENQRKKRQEELNSQFQAKAAMVASLEAQYTQ
RQKNFSRQQKIKTVDGIQAKQDVSAAYLEKFRQKVEFYGNRFYPESARIQRLAGDVRLMVILNQNGGIRAIRLLESSGHT
VLDEAARTSLRKAAPFGAFDANMKDISELRIIRTWRFDPAEAEFEVR
MPLVKSWWKDPIFSSAVGIAALLHIMILMLQFGMPSEQDTSTKEIAVSLRISNDKIEHADFLAQTDQQGSGQFREAHRMS
SDAPLPMPDQAAGKEAMLQNSQDMLQQKQELSFEEKVLMTTLSWQKQAEENQRKKRQEELNSQFQAKAAMVASLEAQYTQ
RQKNFSRQQKIKTVDGIQAKQDVSAAYLEKFRQKVEFYGNRFYPESARIQRLAGDVRLMVILNQNGGIRAIRLLESSGHT
VLDEAARTSLRKAAPFGAFDANMKDISELRIIRTWRFDPAEAEFEVR
Nucleotide
Download Length: 864 bp
>NTDB_id=263049 C0119_RS02690 WP_193759969.1 534299..535162(+) (tonB2) [Acinetobacter schindleri strain SGAir0122]
ATGCCCTTGGTTAAATCATGGTGGAAAGATCCAATTTTTAGCAGTGCTGTAGGGATTGCTGCATTATTACATATCATGAT
TTTAATGCTGCAGTTTGGAATGCCATCGGAACAGGATACTTCGACCAAGGAAATTGCAGTCAGCCTGCGCATCAGTAATG
ACAAAATCGAGCATGCCGATTTTCTTGCCCAGACAGATCAGCAAGGTTCCGGTCAGTTCCGTGAAGCGCATCGTATGTCC
AGTGATGCTCCATTGCCGATGCCGGATCAGGCAGCTGGAAAAGAAGCAATGCTTCAAAACAGCCAAGATATGCTGCAACA
AAAACAGGAGTTGAGCTTTGAAGAAAAAGTTCTGATGACAACCCTAAGCTGGCAGAAACAGGCAGAAGAAAATCAGCGCA
AGAAACGTCAGGAAGAACTCAACAGCCAGTTTCAAGCCAAAGCTGCTATGGTCGCGAGTCTGGAAGCTCAATATACGCAG
CGCCAGAAAAACTTTAGCCGTCAGCAGAAAATTAAAACTGTTGATGGTATCCAAGCCAAGCAGGATGTATCTGCAGCTTA
TCTGGAAAAATTCCGTCAAAAAGTCGAATTTTATGGGAATCGTTTTTATCCTGAATCTGCCCGTATACAGCGTTTGGCGG
GCGACGTCCGCTTAATGGTGATTTTGAATCAAAACGGGGGTATTCGAGCGATTCGCTTGTTGGAATCTTCTGGTCATACT
GTATTGGATGAAGCTGCTCGAACCTCATTACGTAAGGCTGCGCCGTTTGGTGCTTTCGATGCCAACATGAAAGATATTTC
AGAATTAAGAATTATCCGAACCTGGCGTTTTGATCCGGCAGAAGCCGAGTTTGAAGTGAGGTGA
ATGCCCTTGGTTAAATCATGGTGGAAAGATCCAATTTTTAGCAGTGCTGTAGGGATTGCTGCATTATTACATATCATGAT
TTTAATGCTGCAGTTTGGAATGCCATCGGAACAGGATACTTCGACCAAGGAAATTGCAGTCAGCCTGCGCATCAGTAATG
ACAAAATCGAGCATGCCGATTTTCTTGCCCAGACAGATCAGCAAGGTTCCGGTCAGTTCCGTGAAGCGCATCGTATGTCC
AGTGATGCTCCATTGCCGATGCCGGATCAGGCAGCTGGAAAAGAAGCAATGCTTCAAAACAGCCAAGATATGCTGCAACA
AAAACAGGAGTTGAGCTTTGAAGAAAAAGTTCTGATGACAACCCTAAGCTGGCAGAAACAGGCAGAAGAAAATCAGCGCA
AGAAACGTCAGGAAGAACTCAACAGCCAGTTTCAAGCCAAAGCTGCTATGGTCGCGAGTCTGGAAGCTCAATATACGCAG
CGCCAGAAAAACTTTAGCCGTCAGCAGAAAATTAAAACTGTTGATGGTATCCAAGCCAAGCAGGATGTATCTGCAGCTTA
TCTGGAAAAATTCCGTCAAAAAGTCGAATTTTATGGGAATCGTTTTTATCCTGAATCTGCCCGTATACAGCGTTTGGCGG
GCGACGTCCGCTTAATGGTGATTTTGAATCAAAACGGGGGTATTCGAGCGATTCGCTTGTTGGAATCTTCTGGTCATACT
GTATTGGATGAAGCTGCTCGAACCTCATTACGTAAGGCTGCGCCGTTTGGTGCTTTCGATGCCAACATGAAAGATATTTC
AGAATTAAGAATTATCCGAACCTGGCGTTTTGATCCGGCAGAAGCCGAGTTTGAAGTGAGGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| tonB2 | Acinetobacter baumannii D1279779 |
72.143 |
97.561 |
0.704 |