Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DV119_RS03415 Genome accession   NZ_CP031245
Coordinates   602804..603574 (+) Length   256 a.a.
NCBI ID   WP_050220959.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M16808     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 597804..608574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV119_RS03400 - 599634..600071 (+) 438 WP_000076479.1 CoA-binding protein -
  DV119_RS11735 - 600112..600450 (+) 339 WP_061849647.1 hypothetical protein -
  DV119_RS03405 - 600479..601489 (-) 1011 WP_000009175.1 YeiH family protein -
  DV119_RS03410 - 601638..602807 (+) 1170 WP_000366348.1 pyridoxal phosphate-dependent aminotransferase -
  DV119_RS03415 recO 602804..603574 (+) 771 WP_050220959.1 DNA repair protein RecO Machinery gene
  DV119_RS03420 plsX 603571..604563 (+) 993 WP_000717456.1 phosphate acyltransferase PlsX -
  DV119_RS03425 - 604569..604802 (+) 234 WP_000136447.1 acyl carrier protein -
  DV119_RS03430 - 604839..605138 (+) 300 Protein_596 transposase family protein -
  DV119_RS03435 blpU 605341..605571 (+) 231 WP_001093487.1 bacteriocin-like peptide BlpU -
  DV119_RS12005 - 605574..605699 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  DV119_RS03440 - 605949..607266 (-) 1318 Protein_599 ISL3 family transposase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29815.41 Da        Isoelectric Point: 6.1534

>NTDB_id=263024 DV119_RS03415 WP_050220959.1 602804..603574(+) (recO) [Streptococcus pneumoniae strain M16808]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRRFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=263024 DV119_RS03415 WP_050220959.1 602804..603574(+) (recO) [Streptococcus pneumoniae strain M16808]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCGATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.828

100

0.988