Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DV119_RS00880 Genome accession   NZ_CP031245
Coordinates   154288..154998 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain M16808     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 149288..159998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV119_RS00860 - 149829..150077 (-) 249 WP_000364990.1 YneF family protein -
  DV119_RS00865 treC 150333..151958 (-) 1626 WP_000171205.1 alpha,alpha-phosphotrehalase -
  DV119_RS00875 treP 152136..154103 (-) 1968 WP_050221119.1 PTS system trehalose-specific EIIBC component -
  DV119_RS00880 treR 154288..154998 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  DV119_RS00890 - 155153..156479 (+) 1327 Protein_166 ISL3 family transposase -
  DV119_RS00895 - 156554..157480 (-) 927 WP_044812815.1 ATP-binding cassette domain-containing protein -
  DV119_RS00900 amiE 157491..158558 (-) 1068 WP_000159553.1 ABC transporter ATP-binding protein Regulator
  DV119_RS00905 amiD 158567..159493 (-) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=262978 DV119_RS00880 WP_000760673.1 154288..154998(+) (treR) [Streptococcus pneumoniae strain M16808]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=262978 DV119_RS00880 WP_000760673.1 154288..154998(+) (treR) [Streptococcus pneumoniae strain M16808]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAAGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593