Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SSA_RS05750 Genome accession   NC_009009
Coordinates   1198228..1199298 (+) Length   356 a.a.
NCBI ID   WP_011836963.1    Uniprot ID   A3CN22
Organism   Streptococcus sanguinis SK36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1193228..1204298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS05735 (SSA_1168) - 1194291..1195982 (+) 1692 WP_011836960.1 metallophosphoesterase -
  SSA_RS05740 (SSA_1169) - 1196103..1196906 (+) 804 WP_033179158.1 alpha/beta hydrolase -
  SSA_RS05745 (SSA_1170) - 1197023..1198051 (-) 1029 WP_011836962.1 hypothetical protein -
  SSA_RS05750 (SSA_1171) xerS 1198228..1199298 (+) 1071 WP_011836963.1 tyrosine recombinase XerS Machinery gene
  SSA_RS05755 (SSA_1172) - 1199378..1200016 (-) 639 WP_011836964.1 hypothetical protein -
  SSA_RS05760 (SSA_1173) - 1200182..1201171 (-) 990 WP_002895497.1 lipoate--protein ligase -
  SSA_RS05765 (SSA_1174) lpdA 1201238..1202944 (-) 1707 WP_011836965.1 dihydrolipoyl dehydrogenase -
  SSA_RS05770 (SSA_1175) - 1203023..1204066 (-) 1044 WP_011836966.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41322.50 Da        Isoelectric Point: 9.5135

>NTDB_id=26296 SSA_RS05750 WP_011836963.1 1198228..1199298(+) (xerS) [Streptococcus sanguinis SK36]
MRRELLLERIDKLKATMPWYILEYYQSKLAVPYSFTTLYEYLKEYDRFFNWVLESGITDASHIAEIPLSVLENMSKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAARAENIKQK
LFLGDETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDS
VNVAAFAKPYLEEYLSIRIKRYKAEKTDTAFFLTEYRGIPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=26296 SSA_RS05750 WP_011836963.1 1198228..1199298(+) (xerS) [Streptococcus sanguinis SK36]
ATGAGACGTGAACTGTTATTAGAAAGAATTGATAAACTTAAGGCTACCATGCCCTGGTACATTTTGGAATATTACCAGTC
TAAGCTGGCAGTGCCTTATAGTTTTACAACCTTATACGAATATCTCAAAGAATATGATCGCTTTTTTAACTGGGTGCTAG
AATCTGGTATCACGGATGCTTCTCATATTGCTGAGATTCCTCTTTCAGTCTTGGAAAATATGAGCAAGAAAGACATGGAG
GCCTTCATTCTGTATCTGCGAGAGCGGCCGCTTCTCAATGCCAATACGACTCAAAACGGTGTTTCCCAGACAACCATAAA
CCGAACTCTGTCAGCTTTGTCCAGCCTCTACAAATATTTGACTGAGGAAGTCGAAAACGAGCAGGGTGAGCCCTACTTCT
ATCGAAATGTGATGAAAAAGGTTGCTACTAAAAAGAAAAAGGAAACTCTGGCCGCTCGTGCAGAGAATATTAAGCAGAAG
CTCTTTTTAGGGGATGAGACGGAAGAATTTCTCCAATATATCGATACAGAGTATCCTAAGAAACTCTCTAATCGCGCCCT
GTCCTCTTTTAACAAGAACAAGGAACGAGATTTAGCCATCATTGCCTTGCTGTTAGCCTCTGGTGTTCGTCTGTCTGAAG
CTGTTAATCTAGACCTGAAAGACATTAATCTCAAAATGATGGTCATTGAAGTAACAAGAAAAGGCGGAAAAAGGGACTCT
GTCAATGTTGCCGCTTTTGCCAAGCCCTATTTAGAAGAGTATCTGAGCATTCGGATCAAGCGATACAAGGCCGAAAAGAC
TGATACAGCCTTCTTTTTGACTGAATACCGCGGCATTCCTAATCGAATCGATGCTTCCAGTGTCGAAAAAATGGTAGCCA
AGTATTCTGAGGACTTCAAGGTGCGAGTGACGCCTCACAAGCTCCGCCACACGCTTGCTACACGTTTATACGATGCAACC
AAATCTCAAGTTCTCGTCAGCCACCAGCTAGGGCATGCTAGCACTCAGGTAACAGACCTCTACACCCACATTGTCAATGA
TGAACAAAAGAATGCTTTAGATAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3CN22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

90.169

100

0.902

Multiple sequence alignment