Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DV390_RS06270 Genome accession   NZ_CP031242
Coordinates   1267644..1268147 (-) Length   167 a.a.
NCBI ID   WP_011272085.1    Uniprot ID   Q4QN52
Organism   Haemophilus influenzae strain M21460     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1262644..1273147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV390_RS06245 - 1262779..1263831 (+) 1053 WP_005691316.1 extracellular solute-binding protein -
  DV390_RS06250 hslU 1263901..1265235 (-) 1335 WP_005666443.1 HslU--HslV peptidase ATPase subunit -
  DV390_RS06255 hslV 1265246..1265773 (-) 528 WP_011272086.1 ATP-dependent protease subunit HslV -
  DV390_RS06260 aphA 1265993..1266700 (+) 708 WP_005652021.1 acid phosphatase AphA -
  DV390_RS06265 - 1266747..1267542 (-) 796 Protein_1200 IS3 family transposase -
  DV390_RS06270 luxS 1267644..1268147 (-) 504 WP_011272085.1 S-ribosylhomocysteine lyase Regulator
  DV390_RS06275 - 1268332..1268805 (-) 474 WP_011272084.1 YqaA family protein -
  DV390_RS06280 - 1268805..1269407 (-) 603 WP_005652027.1 beta-phosphoglucomutase family hydrolase -
  DV390_RS06285 - 1269523..1269900 (+) 378 WP_011272083.1 PRD domain-containing protein -
  DV390_RS06290 rsmG 1270040..1270651 (+) 612 WP_005652031.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  DV390_RS06295 - 1270777..1271151 (+) 375 WP_011272082.1 ATP synthase subunit I -
  DV390_RS06300 atpB 1271188..1271976 (+) 789 WP_005629251.1 F0F1 ATP synthase subunit A -
  DV390_RS06305 atpE 1272032..1272286 (+) 255 WP_005652035.1 F0F1 ATP synthase subunit C -
  DV390_RS06310 atpF 1272336..1272806 (+) 471 WP_005629246.1 F0F1 ATP synthase subunit B -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18518.17 Da        Isoelectric Point: 4.8168

>NTDB_id=262948 DV390_RS06270 WP_011272085.1 1267644..1268147(-) (luxS) [Haemophilus influenzae strain M21460]
MPLLDSFKVDHTKMNAPAVRIAKTMCTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQEVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLS
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=262948 DV390_RS06270 WP_011272085.1 1267644..1268147(-) (luxS) [Haemophilus influenzae strain M21460]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGCACCTGCAGTACGCATTGCAAAAACGATGTGCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAAAGGCATTC
ATACACTTGAACATTTATTTGCTGGATTTATGCGCGATCATTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGCACGGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGGAAGTGTCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAGCTTCTATTCCCGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGCGGTATAGGTGTAAATAAAAATGAAGATTTGTCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QN52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.096

99.401

0.737