Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   DV390_RS04925 Genome accession   NZ_CP031242
Coordinates   995606..997465 (-) Length   619 a.a.
NCBI ID   WP_042594349.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M21460     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 990606..1002465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV390_RS04915 lptD 991367..993715 (+) 2349 WP_005689018.1 LPS assembly protein LptD -
  DV390_RS04920 proS 993803..995521 (-) 1719 WP_042594350.1 proline--tRNA ligase -
  DV390_RS04925 recQ 995606..997465 (-) 1860 WP_042594349.1 DNA helicase RecQ Machinery gene
  DV390_RS04930 cyaY 997467..997772 (-) 306 WP_005655473.1 iron donor protein CyaY -
  DV390_RS04935 lptM 997870..997986 (+) 117 WP_005652274.1 LPS translocon maturation chaperone LptM -
  DV390_RS04940 lysA 998034..999281 (+) 1248 WP_011272198.1 diaminopimelate decarboxylase -
  DV390_RS04945 - 999487..1000113 (+) 627 WP_005648546.1 response regulator -
  DV390_RS04950 - 1000175..1000615 (-) 441 WP_005648547.1 DUF2489 domain-containing protein -
  DV390_RS04955 yihI 1000619..1001179 (-) 561 WP_005648548.1 Der GTPase-activating protein YihI -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 70093.53 Da        Isoelectric Point: 8.1652

>NTDB_id=262938 DV390_RS04925 WP_042594349.1 995606..997465(-) (recQ) [Haemophilus influenzae strain M21460]
MLDSPLPSKIIEKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLISL
MKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKVMTNSFFQLISYSKVCFIAIDEAHCISQWGHD
FRTEYTQLGGLKASFPDAPIMALTATADYATQKDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGK
SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSI
ESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILFEKPETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQTPC
NNCDICLDPPKKYDGLVDAQKVMSTIYRVGQCFGAHYVIAVLRGMHNQKIIERQHHKLSVYGIGKDKSKEHWQSVIRQLI
HLGFVQQVISELNPTLQLTESAKVILKGEEPLELAMPRISSISKIAHNPQRQGVANYDKDLFARLRFLRKQIADKENIPP
YIVFNDATLQEMAQYMPTSNIEMLQINGVGSIKLERFGQPFMALIQEHKAILANAQNND

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=262938 DV390_RS04925 WP_042594349.1 995606..997465(-) (recQ) [Haemophilus influenzae strain M21460]
ATGCTGGATTCTCCTTTACCATCAAAAATAATAGAAAAACCGACCGCACTTTCTGTTTTGAAATCGGTTTTCGGTTATCA
ATCTTTCCGTAAAGGGCAGGAAGAAGTTATTAATGCTGCTTTAAATGGACAAGATGCGTTGGTGGTAATGGCAACGGGGA
ATGGCAAATCGCTTTGTTACCAAATTCCCGCACTTTGTTTTGATGGTTTAACTTTAGTGATTTCTCCGCTGATTTCCTTG
ATGAAAGATCAAGTGGATCAGCTGCAAGCTAATGGAATTGAGGCGGATTTTCTTAATTCTAGTCAGACTTTAGAACAGCA
GCAACAAGTACAAAATAAGCTTATTTCTGGGCAACTTAAACTACTTTATGTGTCGCCAGAAAAAGTGATGACGAACAGTT
TCTTTCAACTTATTTCTTATAGCAAAGTCTGCTTTATTGCGATTGATGAAGCACATTGTATTTCTCAATGGGGGCATGAC
TTTCGCACTGAATATACCCAGCTTGGCGGTTTAAAAGCCAGTTTCCCTGATGCGCCGATTATGGCACTTACGGCAACGGC
AGATTATGCGACTCAAAAAGATATTCTGCGGCATCTTAATCTGAAAAATCTGCACAAATATATTGGTAGTTTTGATCGAC
CAAATATTCGTTATACCTTGGAAGAAAAATACAAACCTATGGAGCAACTGACACGTTTTGTGTTGGCTCAAAAGGGTAAG
AGTGGGATTATTTATTGCAACAGCAGAAATAAGGTTGAGCGAATTGCGGAAAGTTTACGCAATAAAGGTGTCTCTGCTGC
TGCTTACCACGCAGGAATGGAAACGGCAATTCGTGAACGTGTGCAACAGGATTTTCAGCGTGATAATGTTCAAGTAGTAG
TCGCAACCATTGCTTTTGGAATGGGGATTAATAAATCCAATGTGCGCTTTGTTGCCCATTTTGATTTACCACGTAGCATT
GAATCTTACTATCAAGAAACAGGTCGAGCAGGACGTGATGATTTGCCTGCCGAGGCGGTTTTGTTTTATGAACCAGCTGA
TTACGCTTGGTTACAAAAAATTCTCTTCGAAAAACCAGAAACGCCACAGCGTCAGATTGAGCAGCATAAATTAGAAGCTA
TTGGGGAATTTGCGGAAAGCCAGACTTGTCGCCGTTTAGTTCTTCTCAATTATTTTGGCGAGCATCGACAAACACCATGT
AATAACTGTGATATTTGCCTTGATCCTCCTAAAAAATATGATGGCTTAGTCGATGCGCAAAAAGTAATGTCTACTATTTA
TCGAGTGGGACAATGTTTTGGTGCACATTATGTGATTGCGGTGTTGCGTGGCATGCACAATCAGAAAATTATTGAACGCC
AACACCATAAACTTTCAGTATATGGCATTGGAAAAGATAAAAGCAAAGAGCATTGGCAGTCTGTTATTCGTCAGCTTATT
CATTTGGGTTTTGTGCAACAGGTTATTAGTGAATTAAATCCAACGTTGCAACTTACTGAAAGTGCGAAAGTGATTTTGAA
AGGCGAAGAACCGTTAGAATTGGCAATGCCTCGTATTTCTTCAATCAGTAAAATTGCCCATAATCCACAACGTCAAGGTG
TTGCAAATTACGATAAGGATTTATTTGCACGCTTGCGTTTCCTACGCAAACAAATTGCCGATAAAGAAAATATTCCGCCG
TACATTGTCTTTAATGATGCGACGTTGCAAGAAATGGCACAATATATGCCGACAAGCAATATTGAAATGTTGCAAATTAA
TGGCGTGGGCTCTATCAAATTAGAGCGGTTTGGGCAGCCGTTTATGGCATTGATTCAAGAACATAAGGCAATTTTGGCGA
ATGCGCAAAATAATGACTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(539-605)

RecQ zinc-binding (RecQ_Zn_bind)

(347-407)

DEAD/DEAH box helicase (DEAD)

(32-193)

Helicase conserved C-terminal domain (Helicase_C)

(228-332)

RQC domain (RQC)

(409-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.262

96.284

0.378