Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DV384_RS06050 Genome accession   NZ_CP031241
Coordinates   1235019..1235621 (+) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae strain M17648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1230019..1240621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV384_RS06035 - 1230874..1233468 (+) 2595 WP_114934599.1 penicillin-binding protein 1A -
  DV384_RS06040 - 1233545..1234390 (+) 846 WP_114934600.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  DV384_RS06045 - 1234559..1234888 (+) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  DV384_RS06050 recR 1235019..1235621 (+) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  DV384_RS06055 - 1235637..1237592 (+) 1956 WP_114934601.1 DNA topoisomerase III -
  DV384_RS06060 secG 1237701..1238042 (+) 342 WP_114890063.1 preprotein translocase subunit SecG -
  DV384_RS06070 - 1238586..1240256 (-) 1671 WP_114934602.1 fructose-specific PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=262887 DV384_RS06050 WP_005626527.1 1235019..1235621(+) (recR) [Haemophilus influenzae strain M17648]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=262887 DV384_RS06050 WP_005626527.1 1235019..1235621(+) (recR) [Haemophilus influenzae strain M17648]
ATGCAAAGCAGCCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAGCGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCCATGTCTAAAA
TTGGTCATTGTTCACAATGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCCGCAGATATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTTGATGGTATTGGGCCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCAACGGTGGAGGGCGATGCGACGGCAAACTATATTGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGTCGTATCGCTCATGGCATTCCTGTCGGTGGTGAACTGGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43