Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   DV369_RS08090 Genome accession   NZ_CP031239
Coordinates   1643473..1645839 (-) Length   788 a.a.
NCBI ID   WP_050949302.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M13034     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1638473..1650839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV369_RS08075 kdsB 1639763..1640527 (-) 765 WP_048949884.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DV369_RS08080 lpxK 1640598..1641596 (-) 999 WP_048949883.1 tetraacyldisaccharide 4'-kinase -
  DV369_RS08085 msbA 1641669..1643432 (-) 1764 WP_050949303.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  DV369_RS08090 rec2 1643473..1645839 (-) 2367 WP_050949302.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DV369_RS08095 dksA 1646099..1646536 (+) 438 WP_005652560.1 RNA polymerase-binding protein DksA -
  DV369_RS08100 pcnB 1646785..1648143 (+) 1359 WP_114893754.1 polynucleotide adenylyltransferase PcnB -
  DV369_RS08105 folK 1648153..1648635 (+) 483 WP_050949300.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DV369_RS08110 tsaE 1648711..1649187 (+) 477 WP_050949299.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DV369_RS08115 - 1649195..1650493 (+) 1299 WP_050949298.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89612.16 Da        Isoelectric Point: 9.8845

>NTDB_id=262841 DV369_RS08090 WP_050949302.1 1643473..1645839(-) (rec2) [Haemophilus influenzae strain M13034]
MKLNLITLAVLLIVADLTLLFLPQSLLLPWQVALVIALVLIFLFIFWRKNFLVSLAFFVASLGYFHHSALSLLQQAQRIT
AQKQMVAFEIQEILHQQDYQTLIATATLTDNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYLSK
GITAVGTVKSAAKIADVSSLRAEKLQQVRKQTEGLSLQGLLIALAFGERAWLDKNTWSIYQQTNTAHLIAISGLHIGLAM
GIGFYLARVVQVFFPTRFMHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVFFVQIMRRYYSPFQLFTLVVGFLLF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWILNLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LMAVPIYSFFLVPLILFAVFTNGAVFSWQLANKLAEGITGLISVFQGNWLTVSFNLALFLTALCAGIFMLIIWCIYRKQE
ASPSTWKIKRPRFFTLNLSKPLLKNERINVLLCSFGIILMCFMILLFKQLNKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSRKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNVVTRADNPHSCVILVDDGKHSVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVTERLQRYKSAVENTAISGQVRVNFFQDRLEIQQARTEFSPWYVRVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=262841 DV369_RS08090 WP_050949302.1 1643473..1645839(-) (rec2) [Haemophilus influenzae strain M13034]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGCTAATTGTTGCGGATTTAACGTTGTTATTTCTACCGCAGTCATTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTTTGGCGTAAAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCTTCTCTTGGCTATTTTCATCATTCGGCTTTGAGTTTATTACAACAAGCTCAACGTATTACC
GCTCAAAAGCAAATGGTGGCTTTTGAGATTCAAGAAATTTTGCATCAACAGGATTATCAAACACTTATCGCCACAGCAAC
ATTGACGGATAACTTACAAGAGCAACGAATTTTTTTAAATTGGAAAGCAAAAGAGGTGCCTCAACTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCGCGATTAAATTTTGGTGGGTTTGATCGGCAACAATGGTATCTTTCAAAA
GGAATTACGGCTGTTGGAACCGTAAAAAGTGCGGCGAAAATTGCTGATGTTTCATCATTGCGTGCAGAAAAATTGCAACA
AGTGAGAAAGCAAACGGAAGGATTATCTCTACAAGGTTTATTGATCGCGTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAAACACTTGGTCAATTTACCAACAAACGAATACCGCGCATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGAATTGGATTTTACTTGGCTCGTGTTGTGCAAGTATTTTTCCCAACCCGTTTTATGCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCCTATTTGGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTCTTCGTTCAAATAATGAGGAGATATTATTCGCCTTTTCAGCTTTTTACGTTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCACTTTCGGTCAGTTTTTGGCTTTCTTGTGGTGCAGTTGGTTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGTCCCTTTTCCCCAAAAGTGCGGTGGATTTTGAATTTATTTCATTTGC
AATTTGGGTTATTGCTTTTTTTTACGCCTTTGCAACTTTTTCTATTTAATGGCTTATCGCTAAGTGGATTTTTAGCCAAT
CTTATGGCTGTTCCAATTTATAGTTTTTTCCTTGTGCCATTAATTTTATTTGCTGTTTTTACCAACGGCGCGGTTTTTTC
TTGGCAACTAGCAAATAAGCTAGCCGAAGGAATTACTGGGTTAATTTCTGTTTTTCAAGGAAATTGGCTCACGGTTTCAT
TTAATTTAGCATTATTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGTGTATTTATCGAAAACAAGAG
GCTTCACCATCAACTTGGAAAATTAAACGACCAAGATTTTTTACATTAAATCTCAGTAAACCTTTGCTAAAAAATGAACG
AATCAACGTTTTGCTATGTTCTTTCGGCATTATTCTTATGTGTTTTATGATTTTGTTGTTTAAACAATTGAACAAACCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTGCAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCATGCAGGTGGTGCTTCGACAATTTTAAAGGCGTATCCCAATGTGGAAT
TGATTACCCCTTCACGAAAAAACTATGGGGAAAATTACCGCACTTTTTGTACAGCTGGACGTGATTGGCATTGGCAAGGG
CTACATTTTCAAATACTTTCTCCTCACAACGTTGTGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTCGATGA
TGGAAAGCATAGCGTTTTACTGACTGGCGATGCTGAAGCAAAAAATGAACAAATTTTTGCCCGCACTTTAGGAAAAATTG
ATGTGTTACAAGTGGGGCATCACGGGAGTAAAACATCGACAAGTGAATACTTGCTTTCTCAGGTTCGACCAGATGTGGCG
ATTATTTCTAGTGGACGTTGGAATCCGTGGAAATTCCCCCATTATTCGGTTACGGAAAGGCTTCAACGCTATAAAAGTGC
GGTAGAAAATACCGCTATTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGAAATCCAGCAAGCTCGCACAG
AATTTTCCCCTTGGTATGTGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)

Domain of unknown function (DUF4131) (DUF4131)

(29-172)

Competence protein (Competence)

(204-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

93.401

100

0.934