Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DV369_RS04605 Genome accession   NZ_CP031239
Coordinates   909862..910332 (-) Length   156 a.a.
NCBI ID   WP_011271835.1    Uniprot ID   A0A377IZH9
Organism   Haemophilus influenzae strain M13034     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 904862..915332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV369_RS04575 - 905620..906126 (-) 507 WP_011271841.1 integrating conjugative element protein -
  DV369_RS04580 - 906142..906900 (-) 759 WP_049370068.1 transglycosylase SLT domain-containing protein -
  DV369_RS04585 - 906879..907619 (-) 741 WP_114893729.1 TIGR03759 family integrating conjugative element protein -
  DV369_RS04590 - 907623..908252 (-) 630 WP_011271838.1 lipoprotein -
  DV369_RS04595 - 908351..909115 (-) 765 WP_011271837.1 TraX family protein -
  DV369_RS04600 - 909173..909769 (-) 597 WP_011271836.1 hypothetical protein -
  DV369_RS04605 radC 909862..910332 (-) 471 WP_011271835.1 DNA repair protein RadC Machinery gene
  DV369_RS04610 - 910433..910840 (-) 408 WP_011271834.1 hypothetical protein -
  DV369_RS04615 - 910875..911516 (-) 642 WP_011271833.1 DUF3560 domain-containing protein -
  DV369_RS04620 - 911631..912059 (-) 429 WP_011271832.1 STY4534 family ICE replication protein -
  DV369_RS04625 - 912944..914989 (-) 2046 WP_014326561.1 DNA topoisomerase III -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17829.52 Da        Isoelectric Point: 5.6051

>NTDB_id=262826 DV369_RS04605 WP_011271835.1 909862..910332(-) (radC) [Haemophilus influenzae strain M13034]
MFKLNEQQQAILEQAQVILTKVMEEKPFYQGAQEFTEPSIAKLYFQTIIGNEERENFVVLFLDRIHRLIKSEVMFQGSVS
ETSVSIREIIRQALKLNASAIIIGHNHPTGNVEPSDADKYITKRLKEACELMDIKLLDHFIVSGSASFCFTDNHLI

Nucleotide


Download         Length: 471 bp        

>NTDB_id=262826 DV369_RS04605 WP_011271835.1 909862..910332(-) (radC) [Haemophilus influenzae strain M13034]
ATGTTTAAATTAAACGAGCAACAACAAGCTATTTTAGAACAGGCACAGGTTATTTTAACTAAAGTGATGGAAGAAAAGCC
CTTTTACCAAGGTGCACAGGAATTTACTGAGCCATCAATAGCTAAACTCTATTTTCAAACCATTATAGGTAATGAGGAAA
GAGAAAATTTCGTGGTACTTTTCTTGGATAGAATCCACAGATTGATTAAATCTGAGGTGATGTTTCAAGGATCTGTTTCA
GAAACTTCTGTGTCAATTCGGGAGATTATTCGACAAGCATTAAAGCTAAATGCATCAGCAATTATCATTGGGCACAATCA
TCCAACTGGAAATGTTGAGCCTAGTGATGCTGATAAATATATAACCAAGAGATTAAAGGAAGCTTGTGAATTAATGGATA
TTAAATTACTTGATCACTTTATCGTTTCTGGTTCAGCATCTTTTTGCTTTACTGATAATCATCTTATTTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(37-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377IZH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

44.667

96.154

0.429