Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   DV369_RS03535 Genome accession   NZ_CP031239
Coordinates   706586..707806 (+) Length   406 a.a.
NCBI ID   WP_050948617.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M13034     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 701586..712806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV369_RS03520 - 701941..703500 (+) 1560 WP_050948620.1 EcbG -
  DV369_RS03525 - 703511..704488 (+) 978 WP_061671256.1 glycosyltransferase -
  DV369_RS03530 - 704530..706533 (+) 2004 WP_230304887.1 capsular polysaccharide biosynthesis protein -
  DV369_RS03535 kpsS 706586..707806 (+) 1221 WP_050948617.1 capsule biosynthesis protein Regulator
  DV369_RS03540 - 707803..709191 (-) 1389 WP_050948616.1 YcjX family protein -
  DV369_RS03545 - 709228..710882 (+) 1655 Protein_676 ABC transporter substrate-binding protein -
  DV369_RS03550 - 710882..711847 (+) 966 WP_050948615.1 ABC transporter permease subunit -
  DV369_RS03555 - 711837..712724 (+) 888 WP_050948614.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 47058.20 Da        Isoelectric Point: 9.2747

>NTDB_id=262822 DV369_RS03535 WP_050948617.1 706586..707806(+) (kpsS) [Haemophilus influenzae strain M13034]
MNHYLDELVQSSKRILLLQGPIGHFFTDLSAWLVGQGKTVYKINFNGGDEHFYPSSIENTIAYRGSVSEFYPYLQLFCKQ
HNIDAMVCFGDNRKYHKIAKKILQDEKIPFWVFEEGYFRPDYVTLEKQGVNAFSPLPRQADFYLEQAENLPEPAVPLKLA
KGFLSMAKVAIAYYIKAYLGRDNYPKYQHHRILNLKYYIKLWVTSGIKRTCYYLRDRSFAKKVTKGELGYFFIVPLQVYD
DSQVKVHCDFNSVGEFLAEVLQSFATSAPNHLNLIIKHHPMDRGFIHYESVILEFESRYPQLKGRLFYVYDVSLPVLLRH
GKGMVTLNSTSGISALLHGMPVITLGRANYHFEGLTHQGDLASFWQNPTKPDMPVFEAYRKYHLNKTMINGSFYNRVILP
LHPDKN

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=262822 DV369_RS03535 WP_050948617.1 706586..707806(+) (kpsS) [Haemophilus influenzae strain M13034]
ATGAACCACTATTTAGATGAATTAGTCCAAAGTTCGAAACGGATTTTACTTTTGCAAGGACCAATCGGCCACTTTTTTAC
CGATCTTTCAGCTTGGTTAGTGGGACAAGGAAAAACCGTTTATAAAATCAATTTTAACGGTGGCGATGAGCATTTTTATC
CGTCATCGATTGAAAACACGATTGCTTATCGTGGCTCAGTGAGTGAGTTCTACCCTTACTTGCAACTATTTTGCAAACAA
CACAATATTGATGCGATGGTTTGCTTTGGTGACAACCGTAAATACCACAAAATTGCAAAAAAAATATTACAAGATGAAAA
AATTCCATTTTGGGTGTTTGAAGAAGGCTATTTCCGTCCTGATTACGTCACACTCGAAAAACAAGGGGTAAATGCGTTCT
CTCCTCTTCCTCGTCAAGCAGATTTCTATCTTGAGCAAGCCGAAAATTTACCTGAGCCAGCTGTACCACTTAAATTAGCC
AAAGGTTTTTTATCGATGGCAAAAGTGGCAATCGCTTATTATATTAAAGCTTATTTGGGGCGAGATAATTACCCGAAATA
CCAGCACCACCGTATTCTGAATCTGAAATACTATATAAAACTCTGGGTTACATCAGGCATTAAGCGGACTTGTTATTACT
TGCGTGATCGCTCGTTTGCAAAAAAAGTAACAAAAGGAGAACTCGGTTATTTTTTTATTGTACCACTGCAAGTTTACGAT
GACAGCCAAGTAAAAGTACATTGCGACTTCAATAGCGTCGGTGAATTCTTAGCTGAAGTACTACAGTCTTTTGCTACATC
TGCGCCTAATCATTTAAACTTGATCATTAAGCACCACCCAATGGATAGAGGTTTTATTCATTATGAGTCTGTTATTCTAG
AGTTTGAAAGCCGCTATCCTCAATTAAAAGGGCGACTATTCTATGTGTACGATGTGTCATTGCCTGTTCTACTTCGCCAT
GGAAAAGGCATGGTAACATTAAACAGTACGAGTGGTATTTCAGCCTTATTACATGGAATGCCCGTTATTACGCTTGGGCG
TGCTAATTATCATTTTGAAGGTCTTACACACCAAGGGGATTTGGCTTCATTTTGGCAAAATCCAACCAAGCCTGATATGC
CTGTATTTGAGGCTTACCGCAAATATCATCTGAATAAAACCATGATTAATGGTAGTTTTTATAATCGAGTGATCCTTCCC
TTACATCCGGATAAAAATTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(84-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.852

96.305

0.365

Multiple sequence alignment