Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DV369_RS00680 Genome accession   NZ_CP031239
Coordinates   133628..134131 (+) Length   167 a.a.
NCBI ID   WP_050948806.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M13034     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 128628..139131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV369_RS00640 atpF 128840..129310 (-) 471 WP_005649414.1 F0F1 ATP synthase subunit B -
  DV369_RS00645 atpE 129360..129614 (-) 255 WP_005629249.1 F0F1 ATP synthase subunit C -
  DV369_RS00650 atpB 129670..130458 (-) 789 WP_005629251.1 F0F1 ATP synthase subunit A -
  DV369_RS00655 - 130486..130860 (-) 375 WP_050848074.1 ATP synthase subunit I -
  DV369_RS00660 rsmG 130979..131590 (-) 612 WP_021034464.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  DV369_RS00665 - 131730..132107 (-) 378 WP_048946801.1 PRD domain-containing protein -
  DV369_RS00670 - 132222..132824 (+) 603 WP_005666454.1 beta-phosphoglucomutase family hydrolase -
  DV369_RS00675 - 132824..133297 (+) 474 WP_050848076.1 YqaA family protein -
  DV369_RS00680 luxS 133628..134131 (+) 504 WP_050948806.1 S-ribosylhomocysteine lyase Regulator
  DV369_RS00685 - 134213..135865 (-) 1653 WP_050948805.1 phospho-sugar mutase -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18596.27 Da        Isoelectric Point: 5.2115

>NTDB_id=262800 DV369_RS00680 WP_050948806.1 133628..134131(+) (luxS) [Haemophilus influenzae strain M13034]
MPLLDSFKVDHTKMNAPAVRIAKTMRTPKGDNITVFDLRFCIPNKEILSPRGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQQVSEAWLASMQDVLGVQDQTAIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLA
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=262800 DV369_RS00680 WP_050948806.1 133628..134131(+) (luxS) [Haemophilus influenzae strain M13034]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGCGCCTGCAGTACGCATTGCAAAAACGATGCGCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAGAGGTATTC
ATACACTTGAACATTTGTTTGCTGGATTTATGCGTGATCACTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGTACTGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGCAAGTGTCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAACCGCTATTCCCGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGTGGTATAGGGGTAAATAAAAATGAAGATTTGGCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

75.904

99.401

0.754

Multiple sequence alignment