Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DV400_RS06250 Genome accession   NZ_CP031236
Coordinates   1266151..1266621 (+) Length   156 a.a.
NCBI ID   WP_011271835.1    Uniprot ID   A0A377IZH9
Organism   Haemophilus influenzae strain M25267     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1261151..1271621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV400_RS06230 - 1261494..1263539 (+) 2046 WP_014326561.1 DNA topoisomerase III -
  DV400_RS06235 - 1264424..1264852 (+) 429 WP_011271832.1 STY4534 family ICE replication protein -
  DV400_RS06240 - 1264967..1265608 (+) 642 WP_011271833.1 DUF3560 domain-containing protein -
  DV400_RS06245 - 1265643..1266050 (+) 408 WP_011271834.1 hypothetical protein -
  DV400_RS06250 radC 1266151..1266621 (+) 471 WP_011271835.1 DNA repair protein RadC Machinery gene
  DV400_RS06255 - 1266714..1267310 (+) 597 WP_011271836.1 hypothetical protein -
  DV400_RS06260 - 1267368..1268132 (+) 765 WP_011271837.1 TraX family protein -
  DV400_RS06265 - 1268231..1268860 (+) 630 WP_011271838.1 lipoprotein -
  DV400_RS06270 - 1268864..1269604 (+) 741 WP_011271839.1 TIGR03759 family integrating conjugative element protein -
  DV400_RS06275 - 1269583..1270341 (+) 759 WP_011271840.1 transglycosylase SLT domain-containing protein -
  DV400_RS06280 - 1270357..1270863 (+) 507 WP_011271841.1 integrating conjugative element protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17829.52 Da        Isoelectric Point: 5.6051

>NTDB_id=262702 DV400_RS06250 WP_011271835.1 1266151..1266621(+) (radC) [Haemophilus influenzae strain M25267]
MFKLNEQQQAILEQAQVILTKVMEEKPFYQGAQEFTEPSIAKLYFQTIIGNEERENFVVLFLDRIHRLIKSEVMFQGSVS
ETSVSIREIIRQALKLNASAIIIGHNHPTGNVEPSDADKYITKRLKEACELMDIKLLDHFIVSGSASFCFTDNHLI

Nucleotide


Download         Length: 471 bp        

>NTDB_id=262702 DV400_RS06250 WP_011271835.1 1266151..1266621(+) (radC) [Haemophilus influenzae strain M25267]
ATGTTTAAATTAAACGAGCAACAACAAGCTATTTTAGAACAGGCACAGGTTATTTTAACTAAAGTGATGGAAGAAAAGCC
CTTTTACCAAGGTGCACAGGAATTTACTGAGCCATCAATAGCTAAACTCTATTTTCAAACCATTATAGGTAATGAGGAAA
GAGAAAATTTCGTGGTACTTTTCTTGGATAGAATCCACAGATTGATTAAATCTGAGGTGATGTTTCAAGGATCTGTTTCA
GAAACTTCTGTGTCAATTCGGGAGATTATTCGACAAGCATTAAAGCTAAATGCATCAGCAATTATCATTGGGCACAATCA
TCCAACTGGAAATGTTGAGCCTAGTGATGCTGATAAATATATAACCAAGAGATTAAAGGAAGCTTGTGAATTAATGGATA
TTAAATTACTTGATCACTTTATCGTTTCTGGTTCAGCATCTTTTTGCTTTACTGATAATCATCTTATTTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(37-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377IZH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

44.667

96.154

0.429

Multiple sequence alignment