Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DV400_RS00460 Genome accession   NZ_CP031236
Coordinates   90630..91133 (-) Length   167 a.a.
NCBI ID   WP_050948806.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M25267     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 85630..96133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV400_RS00455 - 88896..90548 (+) 1653 WP_050948805.1 phospho-sugar mutase -
  DV400_RS00460 luxS 90630..91133 (-) 504 WP_050948806.1 S-ribosylhomocysteine lyase Regulator
  DV400_RS00465 - 91464..91937 (-) 474 WP_050848076.1 YqaA family protein -
  DV400_RS00470 - 91937..92539 (-) 603 WP_114892213.1 beta-phosphoglucomutase family hydrolase -
  DV400_RS00475 - 92654..93031 (+) 378 WP_048946801.1 PRD domain-containing protein -
  DV400_RS00480 rsmG 93171..93782 (+) 612 WP_021034464.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  DV400_RS00485 - 93901..94275 (+) 375 WP_050848074.1 ATP synthase subunit I -
  DV400_RS00490 atpB 94303..95091 (+) 789 WP_005629251.1 F0F1 ATP synthase subunit A -
  DV400_RS00495 atpE 95147..95401 (+) 255 WP_005629249.1 F0F1 ATP synthase subunit C -
  DV400_RS00500 atpF 95451..95921 (+) 471 WP_005649414.1 F0F1 ATP synthase subunit B -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18596.27 Da        Isoelectric Point: 5.2115

>NTDB_id=262663 DV400_RS00460 WP_050948806.1 90630..91133(-) (luxS) [Haemophilus influenzae strain M25267]
MPLLDSFKVDHTKMNAPAVRIAKTMRTPKGDNITVFDLRFCIPNKEILSPRGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQQVSEAWLASMQDVLGVQDQTAIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLA
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=262663 DV400_RS00460 WP_050948806.1 90630..91133(-) (luxS) [Haemophilus influenzae strain M25267]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGCGCCTGCAGTACGCATTGCAAAAACGATGCGCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAGAGGTATTC
ATACACTTGAACATTTGTTTGCTGGATTTATGCGTGATCACTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGTACTGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGCAAGTGTCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAACCGCTATTCCCGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGTGGTATAGGGGTAAATAAAAATGAAGATTTGGCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

75.904

99.401

0.754