Detailed information NTG0262641

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DVH14_RS18900
• Genome accession: NZ_CP031231
• Coordinates: 3858160..3859152 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Es_ST410_NW1_NDM_09_2017
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3853160..3864152

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DVH14_RS18880 (DVH14_19940)	otnK	3853935..3855197 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
DVH14_RS18885 (DVH14_19945)	ygbL	3855194..3855832 (+)	639	WP_001278994.1	aldolase	-
DVH14_RS18890 (DVH14_19950)	ygbM	3855837..3856613 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
DVH14_RS18895 (DVH14_19955)	ygbN	3856702..3858066 (+)	1365	WP_000104456.1	GntP family transporter	-
DVH14_RS18900 (DVH14_19960)	rpoS	3858160..3859152 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
DVH14_RS18905 (DVH14_19965)	nlpD	3859215..3860311 (-)	1097	Protein_3671	murein hydrolase activator NlpD	-
DVH14_RS18910 (DVH14_19970)	pcm	3860496..3861122 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
DVH14_RS18915 (DVH14_19975)	surE	3861116..3861877 (-)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
DVH14_RS18920 (DVH14_19980)	truD	3861858..3862907 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
DVH14_RS18925 (DVH14_19985)	ispF	3862904..3863383 (-)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DVH14_RS18930 (DVH14_19990)	ispD	3863383..3864093 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=262641 DVH14_RS18900 WP_000081550.1 3858160..3859152(-) (rpoS) [Escherichia coli strain Es_ST410_NW1_NDM_09_2017]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=262641 DVH14_RS18900 WP_000081550.1 3858160..3859152(-) (rpoS) [Escherichia coli strain Es_ST410_NW1_NDM_09_2017]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715