Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   DVH14_RS14890 Genome accession   NZ_CP031231
Coordinates   3032749..3034176 (+) Length   475 a.a.
NCBI ID   WP_000980615.1    Uniprot ID   -
Organism   Escherichia coli strain Es_ST410_NW1_NDM_09_2017     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3027749..3039176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVH14_RS25710 - 3027898..3028287 (+) 390 WP_001445118.1 IS110 family transposase -
  DVH14_RS26090 - 3028558..3028923 (+) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  DVH14_RS14870 (DVH14_15765) tmaR 3029024..3029353 (-) 330 WP_000450409.1 DUF496 family protein -
  DVH14_RS14875 (DVH14_15770) yeeA 3029525..3030583 (-) 1059 WP_001200892.1 FUSC family protein -
  DVH14_RS14880 (DVH14_15775) sbmC 3030782..3031255 (-) 474 WP_001105385.1 DNA gyrase inhibitor SbmC -
  DVH14_RS14885 (DVH14_15780) dacD 3031374..3032540 (-) 1167 WP_046660321.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  DVH14_RS14890 (DVH14_15785) sbcB 3032749..3034176 (+) 1428 WP_000980615.1 exodeoxyribonuclease I Machinery gene
  DVH14_RS14895 (DVH14_15790) tsuB 3034219..3034446 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  DVH14_RS14900 (DVH14_15795) tsuA 3034460..3035419 (-) 960 Protein_2890 YeeE/YedE family protein -
  DVH14_RS14905 (DVH14_15805) - 3035471..3036168 (+) 698 WP_250112894.1 IS1-like element IS1A family transposase -
  DVH14_RS14910 (DVH14_15810) plaP 3036238..3037596 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  DVH14_RS14915 (DVH14_15815) yoeI 3037586..3037648 (-) 63 WP_010723108.1 membrane protein YoeI -
  DVH14_RS14920 (DVH14_15820) yeeY 3037863..3038792 (-) 930 WP_000803370.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54444.71 Da        Isoelectric Point: 5.4700

>NTDB_id=262628 DVH14_RS14890 WP_000980615.1 3032749..3034176(+) (sbcB) [Escherichia coli strain Es_ST410_NW1_NDM_09_2017]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=262628 DVH14_RS14890 WP_000980615.1 3032749..3034176(+) (sbcB) [Escherichia coli strain Es_ST410_NW1_NDM_09_2017]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGTCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583