Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DVH14_RS06585 Genome accession   NZ_CP031231
Coordinates   1383053..1383658 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain Es_ST410_NW1_NDM_09_2017     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1378053..1388658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVH14_RS26305 - 1378607..1378705 (+) 99 Protein_1267 hypothetical protein -
  DVH14_RS06555 (DVH14_07000) rsmS 1378758..1378919 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  DVH14_RS06560 (DVH14_07005) priC 1378933..1379460 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  DVH14_RS06565 (DVH14_07010) ybaN 1379530..1379907 (+) 378 WP_001188905.1 DUF454 family protein -
  DVH14_RS06570 (DVH14_07020) apt 1380060..1380611 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  DVH14_RS06575 (DVH14_07025) dnaX 1380740..1382671 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  DVH14_RS06580 (DVH14_07030) ybaB 1382724..1383053 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  DVH14_RS06585 (DVH14_07035) recR 1383053..1383658 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  DVH14_RS06590 (DVH14_07040) htpG 1383768..1385642 (+) 1875 WP_000678213.1 molecular chaperone HtpG -
  DVH14_RS06595 (DVH14_07050) adk 1385823..1386467 (+) 645 WP_001220233.1 adenylate kinase -
  DVH14_RS06605 (DVH14_07055) hemH 1386703..1387665 (+) 963 WP_001250088.1 ferrochelatase -
  DVH14_RS06610 (DVH14_07060) aes 1387662..1388621 (-) 960 WP_000801846.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=262610 DVH14_RS06585 WP_001195025.1 1383053..1383658(+) (recR) [Escherichia coli strain Es_ST410_NW1_NDM_09_2017]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=262610 DVH14_RS06585 WP_001195025.1 1383053..1383658(+) (recR) [Escherichia coli strain Es_ST410_NW1_NDM_09_2017]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443