Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DVH14_RS00265 Genome accession   NZ_CP031231
Coordinates   56116..56784 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain Es_ST410_NW1_NDM_09_2017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 51116..61784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVH14_RS00235 (DVH14_00250) rfaQ 51294..52352 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  DVH14_RS00240 (DVH14_00255) waaA 52765..54042 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  DVH14_RS00245 (DVH14_00260) coaD 54050..54529 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  DVH14_RS00250 (DVH14_00265) mutM 54568..55377 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  DVH14_RS00255 (DVH14_00270) rpmG 55475..55642 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  DVH14_RS00260 (DVH14_00275) rpmB 55663..55899 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  DVH14_RS00265 (DVH14_00280) radC 56116..56784 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  DVH14_RS00270 (DVH14_00285) coaBC 56956..58176 (+) 1221 WP_000050158.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  DVH14_RS00275 (DVH14_00290) dut 58154..58612 (+) 459 WP_000976070.1 dUTP diphosphatase -
  DVH14_RS00280 (DVH14_00295) slmA 58719..59315 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  DVH14_RS26390 (DVH14_00300) - 59361..60319 (-) 959 Protein_53 reverse transcriptase family protein -
  DVH14_RS00290 (DVH14_00305) pyrE 60617..61258 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=262582 DVH14_RS00265 WP_001297375.1 56116..56784(-) (radC) [Escherichia coli strain Es_ST410_NW1_NDM_09_2017]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=262582 DVH14_RS00265 WP_001297375.1 56116..56784(-) (radC) [Escherichia coli strain Es_ST410_NW1_NDM_09_2017]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGTTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGACTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496