Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DV870_RS24900 Genome accession   NZ_CP031215
Coordinates   4844247..4844762 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain Es_ST80_L1_NDM_10_2017     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4839247..4849762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV870_RS24855 (DV870_24855) csrA 4840102..4840287 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  DV870_RS24885 (DV870_24885) yqaB 4841477..4842043 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  DV870_RS24890 (DV870_24890) yqaA 4842040..4842468 (+) 429 WP_001287462.1 YqaA family protein -
  DV870_RS24895 (DV870_24895) gshA 4842541..4844097 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  DV870_RS24900 (DV870_24900) luxS 4844247..4844762 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  DV870_RS24905 (DV870_24905) tnpA 4844899..4845357 (-) 459 WP_000526113.1 IS200/IS605-like element IS200C family transposase -
  DV870_RS24915 (DV870_24915) emrB 4845536..4847074 (-) 1539 WP_021531519.1 multidrug efflux MFS transporter permease subunit EmrB -
  DV870_RS24920 (DV870_24920) emrA 4847091..4848263 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  DV870_RS24925 (DV870_24925) emrR 4848390..4848920 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  DV870_RS24930 (DV870_24930) ygaH 4849011..4849346 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=262575 DV870_RS24900 WP_001130208.1 4844247..4844762(+) (luxS) [Escherichia coli strain Es_ST80_L1_NDM_10_2017]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=262575 DV870_RS24900 WP_001130208.1 4844247..4844762(+) (luxS) [Escherichia coli strain Es_ST80_L1_NDM_10_2017]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737