Detailed information NTG0262572

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DV870_RS24605
• Genome accession: NZ_CP031215
• Coordinates: 4787861..4788853 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Es_ST80_L1_NDM_10_2017
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4782861..4793853

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DV870_RS24575 (DV870_24575)	ispD	4782922..4783632 (+)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
DV870_RS24580 (DV870_24580)	ispF	4783632..4784111 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DV870_RS24585 (DV870_24585)	truD	4784108..4785157 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
DV870_RS24590 (DV870_24590)	surE	4785138..4785899 (+)	762	WP_021531527.1	5'/3'-nucleotidase SurE	-
DV870_RS24595 (DV870_24595)	pcm	4785893..4786519 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
DV870_RS24600 (DV870_24600)	nlpD	4786704..4787798 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
DV870_RS24605 (DV870_24605)	rpoS	4787861..4788853 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
DV870_RS24610 (DV870_24610)	-	4789031..4789582 (-)	552	WP_001179442.1	flavodoxin family protein	-
DV870_RS24615 (DV870_24615)	-	4789807..4790850 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
DV870_RS24620 (DV870_24620)	ygbN	4790993..4792357 (-)	1365	WP_021531526.1	GntP family transporter	-
DV870_RS24625 (DV870_24625)	ygbM	4792446..4793222 (-)	777	WP_001136911.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=262572 DV870_RS24605 WP_000081550.1 4787861..4788853(+) (rpoS) [Escherichia coli strain Es_ST80_L1_NDM_10_2017]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=262572 DV870_RS24605 WP_000081550.1 4787861..4788853(+) (rpoS) [Escherichia coli strain Es_ST80_L1_NDM_10_2017]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGATCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715