Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DV870_RS22795 Genome accession   NZ_CP031215
Coordinates   4428478..4428954 (-) Length   158 a.a.
NCBI ID   WP_001313574.1    Uniprot ID   -
Organism   Escherichia coli strain Es_ST80_L1_NDM_10_2017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4423478..4433954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV870_RS22760 (DV870_22760) - 4425049..4425219 (-) 171 Protein_4182 IS110 family transposase -
  DV870_RS22765 (DV870_22765) - 4425561..4426403 (-) 843 WP_001519083.1 DUF4942 domain-containing protein -
  DV870_RS22770 (DV870_22770) - 4426488..4426685 (-) 198 WP_000445282.1 DUF957 domain-containing protein -
  DV870_RS22775 (DV870_22775) - 4426705..4427196 (-) 492 WP_001555675.1 DUF5983 family protein -
  DV870_RS22780 (DV870_22780) - 4427193..4427567 (-) 375 WP_001555674.1 TA system toxin CbtA family protein -
  DV870_RS22785 (DV870_22785) - 4427657..4428025 (-) 369 WP_001327592.1 type IV toxin-antitoxin system YeeU family antitoxin -
  DV870_RS22790 (DV870_22790) - 4428188..4428409 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  DV870_RS22795 (DV870_22795) radC 4428478..4428954 (-) 477 WP_001313574.1 RadC family protein Machinery gene
  DV870_RS22800 (DV870_22800) - 4428970..4429443 (-) 474 WP_001313575.1 antirestriction protein -
  DV870_RS22805 (DV870_22805) - 4429537..4429782 (-) 246 WP_001164966.1 hypothetical protein -
  DV870_RS22810 (DV870_22810) - 4429782..4430600 (-) 819 WP_021527435.1 DUF932 domain-containing protein -
  DV870_RS22820 (DV870_22820) - 4430690..4430923 (-) 234 WP_001278282.1 DUF905 family protein -
  DV870_RS22825 (DV870_22825) - 4430929..4431606 (-) 678 WP_001519094.1 hypothetical protein -
  DV870_RS22830 (DV870_22830) - 4431754..4432434 (-) 681 WP_001555671.1 WYL domain-containing protein -
  DV870_RS22835 (DV870_22835) - 4432637..4433521 (-) 885 WP_000010377.1 YfjP family GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17749.42 Da        Isoelectric Point: 7.6152

>NTDB_id=262567 DV870_RS22795 WP_001313574.1 4428478..4428954(-) (radC) [Escherichia coli strain Es_ST80_L1_NDM_10_2017]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=262567 DV870_RS22795 WP_001313574.1 4428478..4428954(-) (radC) [Escherichia coli strain Es_ST80_L1_NDM_10_2017]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACTCCCAGTAAGGCAGACCGCCTTATCACGGAACGCCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399