Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DV870_RS18905 Genome accession   NZ_CP031215
Coordinates   3672978..3673646 (+) Length   222 a.a.
NCBI ID   WP_021531695.1    Uniprot ID   -
Organism   Escherichia coli strain Es_ST80_L1_NDM_10_2017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3667978..3678646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV870_RS18870 (DV870_18870) yicC 3667997..3668860 (-) 864 WP_021521117.1 YicC/YloC family endoribonuclease -
  DV870_RS18880 (DV870_18880) rph 3668987..3669703 (+) 717 WP_001247093.1 ribonuclease PH -
  DV870_RS18885 (DV870_18885) pyrE 3669769..3670410 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  DV870_RS18890 (DV870_18890) slmA 3670447..3671043 (-) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  DV870_RS18895 (DV870_18895) dut 3671150..3671608 (-) 459 WP_000976070.1 dUTP diphosphatase -
  DV870_RS18900 (DV870_18900) coaBC 3671586..3672806 (-) 1221 WP_042059399.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  DV870_RS18905 (DV870_18905) radC 3672978..3673646 (+) 669 WP_021531695.1 DNA repair protein RadC Machinery gene
  DV870_RS18910 (DV870_18910) rpmB 3673863..3674099 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  DV870_RS18915 (DV870_18915) rpmG 3674120..3674287 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  DV870_RS18920 (DV870_18920) mutM 3674385..3675194 (+) 810 WP_001114542.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  DV870_RS18925 (DV870_18925) coaD 3675233..3675712 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  DV870_RS18930 (DV870_18930) waaA 3675720..3676997 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  DV870_RS18935 (DV870_18935) rfaQ 3677410..3678472 (+) 1063 Protein_3470 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25272.38 Da        Isoelectric Point: 7.9748

>NTDB_id=262549 DV870_RS18905 WP_021531695.1 3672978..3673646(+) (radC) [Escherichia coli strain Es_ST80_L1_NDM_10_2017]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMELRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=262549 DV870_RS18905 WP_021531695.1 3672978..3673646(+) (radC) [Escherichia coli strain Es_ST80_L1_NDM_10_2017]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTACGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGAGTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

50

100

0.5