Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DV870_RS07920 Genome accession   NZ_CP031215
Coordinates   1501786..1502262 (-) Length   158 a.a.
NCBI ID   WP_001186727.1    Uniprot ID   -
Organism   Escherichia coli strain Es_ST80_L1_NDM_10_2017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1496786..1507262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV870_RS07875 (DV870_07875) ghrA 1496943..1497881 (-) 939 WP_042059643.1 glyoxylate/hydroxypyruvate reductase GhrA -
  DV870_RS07885 (DV870_07885) - 1498352..1499195 (-) 844 Protein_1460 DUF4942 domain-containing protein -
  DV870_RS07890 (DV870_07890) - 1499292..1499489 (-) 198 WP_000839287.1 DUF957 domain-containing protein -
  DV870_RS07895 (DV870_07895) - 1499486..1499988 (-) 503 Protein_1462 DUF5983 family protein -
  DV870_RS07900 (DV870_07900) - 1499985..1500362 (-) 378 WP_000854738.1 TA system toxin CbtA family protein -
  DV870_RS07905 (DV870_07905) - 1500409..1500783 (-) 375 WP_021531223.1 type IV toxin-antitoxin system YeeU family antitoxin -
  DV870_RS07910 (DV870_07910) - 1500833..1501477 (-) 645 WP_021531222.1 hypothetical protein -
  DV870_RS07915 (DV870_07915) - 1501496..1501717 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  DV870_RS07920 (DV870_07920) radC 1501786..1502262 (-) 477 WP_001186727.1 RadC family protein Machinery gene
  DV870_RS07925 (DV870_07925) - 1502278..1502751 (-) 474 WP_099770379.1 antirestriction protein -
  DV870_RS07930 (DV870_07930) - 1502845..1503090 (-) 246 WP_001164966.1 hypothetical protein -
  DV870_RS07935 (DV870_07935) - 1503090..1503911 (-) 822 WP_021531220.1 DUF932 domain-containing protein -
  DV870_RS28185 (DV870_07940) - 1504090..1504221 (-) 132 WP_042107502.1 DUF905 family protein -
  DV870_RS27630 - 1504322..1504777 (-) 456 Protein_1472 IrmA family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.30 Da        Isoelectric Point: 7.2020

>NTDB_id=262508 DV870_RS07920 WP_001186727.1 1501786..1502262(-) (radC) [Escherichia coli strain Es_ST80_L1_NDM_10_2017]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=262508 DV870_RS07920 WP_001186727.1 1501786..1502262(-) (radC) [Escherichia coli strain Es_ST80_L1_NDM_10_2017]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACTCCCAGTAAGGCAGACCGCCTTATCACGGAACGCCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399