Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DV870_RS01910 Genome accession   NZ_CP031215
Coordinates   395823..396299 (-) Length   158 a.a.
NCBI ID   WP_001186727.1    Uniprot ID   -
Organism   Escherichia coli strain Es_ST80_L1_NDM_10_2017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 390823..401299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV870_RS01860 (DV870_01860) sbmC 391305..391778 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  DV870_RS01865 (DV870_01865) yeeA 391976..393034 (+) 1059 WP_001200890.1 FUSC family protein -
  DV870_RS01870 (DV870_01870) tmaR 393206..393535 (+) 330 WP_000450409.1 DUF496 family protein -
  DV870_RS28525 (DV870_01875) - 393636..393818 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  DV870_RS28080 - 393938..394018 (+) 81 WP_023441679.1 hypothetical protein -
  DV870_RS01885 (DV870_01885) - 394307..394387 (-) 81 Protein_358 hypothetical protein -
  DV870_RS01890 (DV870_01890) yeeW 394433..394627 (-) 195 WP_000988601.1 DUF5983 family protein -
  DV870_RS01895 (DV870_01895) cbtA 394624..394998 (-) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  DV870_RS01900 (DV870_01900) cbeA 395087..395455 (-) 369 WP_001285586.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  DV870_RS01905 (DV870_01905) yeeT 395529..395754 (-) 226 Protein_362 DUF987 domain-containing protein -
  DV870_RS01910 (DV870_01910) radC 395823..396299 (-) 477 WP_001186727.1 RadC family protein Machinery gene
  DV870_RS01915 (DV870_01915) - 396315..396800 (-) 486 WP_114710109.1 antirestriction protein -
  DV870_RS01920 (DV870_01920) - 396891..397712 (-) 822 WP_001234569.1 DUF932 domain-containing protein -
  DV870_RS01930 (DV870_01930) - 397933..398343 (-) 411 WP_000846704.1 hypothetical protein -
  DV870_RS01935 (DV870_01935) - 398359..399034 (-) 676 Protein_367 hypothetical protein -
  DV870_RS01940 (DV870_01940) - 399170..400242 (-) 1073 Protein_368 patatin-like phospholipase family protein -
  DV870_RS01945 (DV870_01945) - 400239..401148 (-) 910 Protein_369 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.30 Da        Isoelectric Point: 7.2020

>NTDB_id=262498 DV870_RS01910 WP_001186727.1 395823..396299(-) (radC) [Escherichia coli strain Es_ST80_L1_NDM_10_2017]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=262498 DV870_RS01910 WP_001186727.1 395823..396299(-) (radC) [Escherichia coli strain Es_ST80_L1_NDM_10_2017]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACTCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399