Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C0J56_RS28245 Genome accession   NZ_CP025542
Coordinates   6231604..6232029 (-) Length   141 a.a.
NCBI ID   WP_109752380.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain 2P24     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6226604..6237029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J56_RS28230 (C0J56_28220) - 6228371..6230431 (-) 2061 WP_134926217.1 methyl-accepting chemotaxis protein -
  C0J56_RS28235 (C0J56_28225) - 6230640..6231179 (-) 540 WP_134926218.1 chemotaxis protein CheW -
  C0J56_RS28240 (C0J56_28230) pilH 6231190..6231555 (-) 366 WP_003206465.1 twitching motility response regulator PilH -
  C0J56_RS28245 (C0J56_28235) pilG 6231604..6232029 (-) 426 WP_109752380.1 twitching motility response regulator PilG Regulator
  C0J56_RS28250 (C0J56_28240) gshB 6232253..6233206 (+) 954 WP_134926219.1 glutathione synthase -
  C0J56_RS28255 (C0J56_28245) - 6233283..6234179 (+) 897 WP_134926220.1 energy transducer TonB -
  C0J56_RS28260 (C0J56_28250) - 6234404..6234973 (+) 570 WP_134926221.1 YqgE/AlgH family protein -
  C0J56_RS28265 (C0J56_28255) ruvX 6234973..6235410 (+) 438 WP_134926222.1 Holliday junction resolvase RuvX -
  C0J56_RS28270 (C0J56_28260) pyrR 6235496..6236002 (+) 507 WP_134926223.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15379.85 Da        Isoelectric Point: 7.4360

>NTDB_id=262470 C0J56_RS28245 WP_109752380.1 6231604..6232029(-) (pilG) [Pseudomonas fluorescens strain 2P24]
MAEHLTQQPSALKVMVIDDSKTIRRTAETLLRNVGCEVITAIDGFDALAKIADHHPGIIFVDIMMPRLDGYQTCALIKNN
SAFKATPVIMLSSRDGLFDKAKGRIVGSDQFLTKPFSKEELLGAIQAHVPGFAAVQPHQAH

Nucleotide


Download         Length: 426 bp        

>NTDB_id=262470 C0J56_RS28245 WP_109752380.1 6231604..6232029(-) (pilG) [Pseudomonas fluorescens strain 2P24]
ATGGCAGAGCATCTCACGCAGCAACCCAGCGCCTTGAAGGTCATGGTCATCGACGACTCGAAGACCATCCGCCGCACCGC
CGAAACCTTGCTGCGCAACGTGGGCTGCGAGGTGATCACGGCAATCGACGGCTTCGATGCCCTGGCCAAGATCGCCGACC
ATCATCCGGGCATCATTTTTGTCGACATCATGATGCCGCGCCTCGATGGCTACCAGACCTGTGCCCTGATCAAGAACAAC
AGCGCGTTCAAGGCCACGCCGGTGATCATGCTGTCGTCCCGGGACGGGTTGTTCGACAAGGCCAAGGGGCGCATCGTCGG
TTCCGATCAGTTTTTGACCAAGCCGTTCAGCAAGGAAGAACTGCTGGGCGCGATACAGGCCCATGTCCCGGGCTTTGCCG
CTGTCCAGCCGCACCAGGCACATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

77.119

83.688

0.645

Multiple sequence alignment