Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C0J56_RS25775 Genome accession   NZ_CP025542
Coordinates   5710487..5711854 (-) Length   455 a.a.
NCBI ID   WP_030140305.1    Uniprot ID   A0A0B1YXD7
Organism   Pseudomonas fluorescens strain 2P24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5705487..5716854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J56_RS25755 (C0J56_25740) yjiA 5706132..5707103 (-) 972 WP_167659359.1 GTPase -
  C0J56_RS25760 (C0J56_25745) - 5707529..5707726 (-) 198 WP_003201656.1 YbdD/YjiX family protein -
  C0J56_RS25765 (C0J56_25750) - 5707740..5709806 (-) 2067 WP_134925898.1 carbon starvation CstA family protein -
  C0J56_RS25770 (C0J56_25755) - 5709965..5710327 (+) 363 WP_134925899.1 PilZ domain-containing protein -
  C0J56_RS25775 (C0J56_25760) radA 5710487..5711854 (-) 1368 WP_030140305.1 DNA repair protein RadA Machinery gene
  C0J56_RS25780 (C0J56_25765) - 5711898..5712446 (-) 549 WP_134926699.1 ankyrin repeat domain-containing protein -
  C0J56_RS25785 (C0J56_25770) katB 5712585..5714125 (-) 1541 Protein_4927 catalase KatB -
  C0J56_RS25790 (C0J56_25775) mscL 5714408..5714821 (+) 414 WP_072411386.1 large-conductance mechanosensitive channel protein MscL -
  C0J56_RS25795 (C0J56_25780) - 5714864..5715640 (-) 777 WP_134925900.1 ferredoxin--NADP reductase -
  C0J56_RS25800 (C0J56_25785) - 5715904..5716644 (+) 741 WP_245150873.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48774.24 Da        Isoelectric Point: 6.8987

>NTDB_id=262467 C0J56_RS25775 WP_030140305.1 5710487..5711854(-) (radA) [Pseudomonas fluorescens strain 2P24]
MAKAKRMYGCTECGSTFPKWAGQCSECGAWNTLTETMVESGGAAAPTGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=262467 C0J56_RS25775 WP_030140305.1 5710487..5711854(-) (radA) [Pseudomonas fluorescens strain 2P24]
ATGGCCAAGGCAAAGCGCATGTACGGCTGCACCGAGTGCGGCTCGACCTTTCCCAAATGGGCCGGCCAGTGCAGCGAGTG
CGGGGCCTGGAACACCCTGACCGAAACCATGGTGGAGAGCGGCGGAGCGGCGGCGCCCACCGGTCGCACTGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAAATTCCACGTTTCTCCACCGCGTCCGGTGAACTG
GACCGCGTACTGGGCGGTGGCCTGGTAGACGGTTCGGTGGTGCTGATCGGCGGCGATCCGGGTATCGGCAAATCCACCAT
CCTGTTGCAAACCTTGTGCAACCTTGCCACCCGCATGCCGGCCCTGTACGTCACCGGCGAAGAGTCCCAGCAGCAGGTCG
CCATGCGCGCCCGGCGCCTGGGGTTGCCCCAGGACCAACTGCGGGTCATGACCGAGACCTGCATCGAAACCATCATCGCC
ACGGCGCGCCTGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACCATTTTTACCGAACAACTGCAATCGGCCCC
GGGCGGCGTGTCCCAGGTACGCGAAAGCGCGGCGTTGTTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TGGGCCACGTCACCAAGGAAGGTGCGCTGGCGGGGCCACGTGTGCTGGAGCACATGGTCGATACGGTTTTGTATTTCGAG
GGCGAATCCGACGGGCGCCTGCGTTTGTTGCGGGCGGTGAAGAACCGCTTTGGTGCCGTCAACGAACTGGGTGTGTTCGG
CATGACCGACCGGGGCCTGAAAGAAGTCTCGAATCCTTCGGCGATCTTTCTGACACGTGCCCAGGAAGAAGTACCGGGCA
GTGTGGTCATGGCGACTTGGGAAGGCACCCGCCCGATGCTGGTGGAAGTGCAAGCGCTGGTGGACGACAGCCACCTGGCG
AACCCGCGTCGGGTCACCCTGGGGCTGGATCAGAATCGGCTGGCCATGCTGCTGGCGGTGTTGCATCGACACGGTGGGAT
TCCGACTCACGACCAGGACGTGTTCCTCAACGTCGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCGGACCTGGCGTTGA
TGGCGGCGGTCATGTCCAGCCTGCGCAACCGGCCGTTGCCCCATGATCTGCTGGTGTTCGGCGAAGTGGGGCTGTCGGGC
GAAGTGCGGCCGGTGCCCAGTGGTCAGGAGCGACTCAAGGAAGCGGCCAAGCACGGTTTCAAACGCGCCATCGTGCCCAA
GGGCAACGCGCCGAAGGAAGCGCCAGCGGGGTTGCAGATCATTGCCGTGACACGCCTGGAACAGGCGTTGGATGCGTTGT
TCGAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B1YXD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus mitis NCTC 12261

46.087

100

0.466
  radA Streptococcus mitis SK321

46.272

100

0.464

Multiple sequence alignment