Detailed information NTG0262434

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DK885_RS05425
• Genome accession: NZ_CP031214
• Coordinates: 1060499..1061491 (+)
• Length: 330 a.a.
• NCBI ID: WP_115784722.1
• Uniprot ID: Q8GKZ6
• Organism: Escherichia coli strain C600
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1055499..1066491

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DK885_RS05395 (DK885_05395)	ispD	1055560..1056270 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
DK885_RS05400 (DK885_05400)	ispF	1056270..1056749 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DK885_RS05405 (DK885_05405)	truD	1056746..1057795 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
DK885_RS05410 (DK885_05410)	surE	1057776..1058537 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
DK885_RS05415 (DK885_05415)	pcm	1058531..1059157 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
DK885_RS05420 (DK885_05420)	nlpD	1059342..1060436 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
DK885_RS05425 (DK885_05425)	rpoS	1060499..1061491 (+)	993	WP_115784722.1	RNA polymerase sigma factor RpoS	Regulator
DK885_RS05430 (DK885_05430)	ygbN	1061585..1062949 (-)	1365	WP_000104441.1	GntP family transporter	-
DK885_RS05435 (DK885_05435)	ygbM	1063038..1063814 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
DK885_RS05440 (DK885_05440)	ygbL	1063819..1064457 (-)	639	WP_001278994.1	aldolase	-
DK885_RS05445 (DK885_05445)	otnK	1064549..1065715 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38006.90 Da
• Isoelectric Point: 4.5886

>NTDB_id=262434 DK885_RS05425 WP_115784722.1 1060499..1061491(+) (rpoS) [Escherichia coli strain C600]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEYEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=262434 DK885_RS05425 WP_115784722.1 1060499..1061491(+) (rpoS) [Escherichia coli strain C600]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAATATGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: Q8GKZ6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715