Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CY657_RS09485 Genome accession   NZ_CP025541
Coordinates   1992804..1993400 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain 2N3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1987804..1998400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CY657_RS09460 - 1987996..1989753 (-) 1758 WP_023286206.1 AAA family ATPase -
  CY657_RS09465 matP 1989939..1990391 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  CY657_RS09470 ompA 1990523..1991593 (-) 1071 WP_002898408.1 porin OmpA -
  CY657_RS09475 sulA 1991946..1992455 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  CY657_RS09485 sxy/tfoX 1992804..1993400 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  CY657_RS09490 yccS 1993414..1995549 (-) 2136 WP_002898422.1 YccS family putative transporter -
  CY657_RS09495 - 1995567..1996013 (-) 447 WP_021312905.1 YccF domain-containing protein -
  CY657_RS09500 helD 1996138..1998192 (+) 2055 WP_004176653.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=262434 CY657_RS09485 WP_004179217.1 1992804..1993400(+) (sxy/tfoX) [Klebsiella pneumoniae strain 2N3]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=262434 CY657_RS09485 WP_004179217.1 1992804..1993400(+) (sxy/tfoX) [Klebsiella pneumoniae strain 2N3]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment