Detailed information NTG0262415

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: CU052_RS13280
• Genome accession: NZ_CP025537
• Coordinates: 2776307..2777728 (-)
• Length: 473 a.a.
• NCBI ID: WP_005445536.1
• Uniprot ID: A0A9X3ML51
• Organism: Vibrio harveyi strain 345
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2771307..2782728

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CU052_RS13255 (CU052_13660)	-	2772000..2772650 (+)	651	WP_005445541.1	thiopurine S-methyltransferase	-
CU052_RS13260 (CU052_13665)	purT	2772727..2773902 (-)	1176	WP_009697365.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
CU052_RS13265 (CU052_13670)	cdd	2774052..2774939 (-)	888	WP_005445539.1	cytidine deaminase	-
CU052_RS13270 (CU052_13675)	-	2775195..2775872 (-)	678	WP_005445538.1	LrgB family protein	-
CU052_RS13275 (CU052_13680)	-	2775874..2776248 (-)	375	WP_005445537.1	CidA/LrgA family protein	-
CU052_RS13280 (CU052_13685)	sbcB	2776307..2777728 (-)	1422	WP_005445536.1	exodeoxyribonuclease I	Machinery gene
CU052_RS13285 (CU052_13690)	-	2778218..2778580 (-)	363	WP_050921748.1	cupin domain-containing protein	-
CU052_RS13290 (CU052_13695)	-	2778720..2779355 (-)	636	WP_050921745.1	LysE family translocator	-
CU052_RS13295 (CU052_13700)	-	2779949..2780644 (+)	696	WP_042606224.1	aspartate/glutamate racemase family protein	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54569.91 Da
• Isoelectric Point: 4.9808

>NTDB_id=262415 CU052_RS13280 WP_005445536.1 2776307..2777728(-) (sbcB) [Vibrio harveyi strain 345]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=262415 CU052_RS13280 WP_005445536.1 2776307..2777728(-) (sbcB) [Vibrio harveyi strain 345]
ATGCACCAAGACAATCAGCCCACTTTTTTCTTTTTCGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGACCGCCCAAG
CCAGTTTGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGCCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATCGCCAAAATTCATGCTGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGACCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAATGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAGCATTTATCCGTAGCGAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGACTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAACAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGATTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTAGTGCATCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACATTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGCTTTTTCTCGCCTGCTG
ATCGCGCTGCTATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCACTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

• Exonuclease (RNase_T) (11-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.281	100	0.793