Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CU052_RS08765 Genome accession   NZ_CP025537
Coordinates   1805716..1806234 (+) Length   172 a.a.
NCBI ID   WP_017189128.1    Uniprot ID   -
Organism   Vibrio harveyi strain 345     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1800716..1811234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU052_RS08755 (CU052_09155) gshA 1803436..1805004 (+) 1569 WP_029790338.1 glutamate--cysteine ligase -
  CU052_RS08760 (CU052_09160) - 1805066..1805629 (+) 564 WP_005448430.1 hypothetical protein -
  CU052_RS08765 (CU052_09165) luxS 1805716..1806234 (+) 519 WP_017189128.1 S-ribosylhomocysteine lyase Regulator
  CU052_RS08770 (CU052_09170) - 1806326..1807600 (-) 1275 WP_005446238.1 HlyC/CorC family transporter -
  CU052_RS08775 (CU052_09175) - 1807755..1808549 (-) 795 WP_005446240.1 inner membrane protein YpjD -
  CU052_RS08780 (CU052_09180) ffh 1808763..1810145 (+) 1383 WP_005446242.1 signal recognition particle protein -
  CU052_RS08785 (CU052_09185) rpsP 1810356..1810604 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  CU052_RS08790 (CU052_09190) rimM 1810633..1811181 (+) 549 WP_101904487.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19053.86 Da        Isoelectric Point: 5.2440

>NTDB_id=262406 CU052_RS08765 WP_017189128.1 1805716..1806234(+) (luxS) [Vibrio harveyi strain 345]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILKAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=262406 CU052_RS08765 WP_017189128.1 1805716..1806234(+) (luxS) [Vibrio harveyi strain 345]
ATGCCTTTATTAGACAGTTTTACCGTGGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAAAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTGCGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855

Multiple sequence alignment