Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SSA_RS00225 Genome accession   NC_009009
Coordinates   29834..30607 (+) Length   257 a.a.
NCBI ID   WP_002920493.1    Uniprot ID   A3CJY8
Organism   Streptococcus sanguinis SK36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24834..35607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS00205 (SSA_0020) - 25704..26669 (+) 966 WP_002894321.1 ribose-phosphate diphosphokinase -
  SSA_RS00210 (SSA_0021) - 26982..27551 (+) 570 WP_011836284.1 LPKTxAVK-anchored surface protein -
  SSA_RS00215 (SSA_0022) srtB 27646..28488 (+) 843 WP_011836285.1 class B sortase, LPKTxAVK-specific -
  SSA_RS00220 (SSA_0023) - 28669..29841 (+) 1173 WP_011836286.1 pyridoxal phosphate-dependent aminotransferase -
  SSA_RS00225 (SSA_0025) recO 29834..30607 (+) 774 WP_002920493.1 DNA repair protein RecO Machinery gene
  SSA_RS00230 (SSA_0026) plsX 30613..31611 (+) 999 WP_009660229.1 phosphate acyltransferase PlsX -
  SSA_RS00235 (SSA_0027) - 31614..31862 (+) 249 WP_009660211.1 acyl carrier protein -
  SSA_RS00240 (SSA_0028) purC 32023..32730 (+) 708 WP_002894328.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29707.01 Da        Isoelectric Point: 5.5857

>NTDB_id=26239 SSA_RS00225 WP_002920493.1 29834..30607(+) (recO) [Streptococcus sanguinis SK36]
MLKSLTSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLAPVIQPLTAANLLMKINDDGLSYIEDYQDVVTYH
RINEDLFIMAYASYVAALADASLQDNQPDPALFAFLQKTLELMNNGLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTG
LPFDFSFKYSGVLCPDHYHQDERRCHLNPNLPFLLDQFQAVRFSELETISLKPDIKKQLRDFIDLLYDEYVGIHLKSKKF
IDSLGDWGSILKDKNEE

Nucleotide


Download         Length: 774 bp        

>NTDB_id=26239 SSA_RS00225 WP_002920493.1 29834..30607(+) (recO) [Streptococcus sanguinis SK36]
ATGCTTAAATCTCTAACAAGTCAAGGTCTGGTTCTCTATAACCGCAATTTCCGTGAGGATGATAAGCTGGTCAAAATCTT
TACGGAACAGGCTGGCAAGCGTATGTTTTTCGTCAAGCATGCTGGTAAATCCAAGCTAGCACCCGTCATTCAGCCCTTGA
CTGCGGCGAACTTGTTGATGAAAATCAATGATGATGGTCTTAGCTATATCGAGGATTATCAGGATGTAGTCACCTACCAT
CGCATCAATGAGGACTTATTCATCATGGCCTATGCCAGTTATGTGGCAGCCTTGGCAGATGCCAGTCTTCAAGACAATCA
GCCAGATCCGGCGCTCTTTGCCTTTCTGCAGAAAACCCTGGAGCTGATGAATAATGGTCTGGACTATGAAGTGCTGACCA
ATATCTTTGAGATTCAGATTTTGTCACGTTTTGGAGTTTCACTGAACTTCCATGACTGTGCCTTTTGTCATCGGACGGGT
CTACCTTTTGACTTCTCTTTCAAATATAGCGGAGTCCTTTGCCCTGATCATTACCATCAGGATGAACGGCGCTGTCATCT
GAATCCTAATCTTCCTTTTCTGCTGGACCAATTTCAGGCGGTTCGCTTTAGCGAATTGGAGACCATTTCTTTGAAGCCAG
ATATAAAAAAGCAGCTACGGGATTTTATTGACCTGCTCTATGATGAATATGTCGGCATCCATCTCAAATCCAAAAAATTT
ATAGATTCTCTGGGGGACTGGGGAAGCATTTTAAAAGATAAGAACGAGGAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(5-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3CJY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

76.562

99.611

0.763

Multiple sequence alignment