Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   C0J00_RS08275 Genome accession   NZ_CP025536
Coordinates   1626349..1627068 (-) Length   239 a.a.
NCBI ID   WP_104968414.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain TH11417     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1621349..1632068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J00_RS08245 (C0J00_08250) rimP 1622512..1623000 (-) 489 WP_407697168.1 ribosome maturation factor RimP -
  C0J00_RS08250 (C0J00_08255) - 1623114..1623560 (-) 447 WP_104968411.1 pyridoxamine 5'-phosphate oxidase family protein -
  C0J00_RS08260 (C0J00_08265) trmB 1623840..1624475 (-) 636 WP_104968412.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  C0J00_RS08265 (C0J00_08270) ccrZ 1624472..1625257 (-) 786 WP_104968870.1 cell cycle regulator CcrZ -
  C0J00_RS08270 (C0J00_08275) - 1625313..1626347 (-) 1035 WP_104968413.1 ABC transporter permease -
  C0J00_RS08275 (C0J00_08280) pptA 1626349..1627068 (-) 720 WP_104968414.1 ABC transporter ATP-binding protein Regulator
  C0J00_RS08280 (C0J00_08285) - 1627139..1627555 (+) 417 WP_104968415.1 HIT family protein -
  C0J00_RS08285 (C0J00_08290) - 1627555..1627857 (+) 303 WP_104968416.1 hypothetical protein -
  C0J00_RS08290 (C0J00_08295) - 1627997..1630507 (-) 2511 WP_104968417.1 GBS Bsp-like repeat-containing protein -
  C0J00_RS08295 (C0J00_08300) trmL 1630588..1631124 (-) 537 WP_199773995.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26703.99 Da        Isoelectric Point: 4.5437

>NTDB_id=262369 C0J00_RS08275 WP_104968414.1 1626349..1627068(-) (pptA) [Streptococcus pluranimalium strain TH11417]
MLKIDHLVGGYVNIPVLKDISFEVSSGEVVGLIGLNGAGKSTTISEIIGLLQPYQGSVTLDGLQLLENPESYRRKIGYIP
ETPILYEELTLQEHLDTVALAYGLGEQQELRQKLLQLFRLEDKLDWYPIHFSKGMKQKVMIIAALMIEPSLLIVDEPFLG
LDPLAIRDLTTIIAEEKSKGTAVLMSTHVLDSAEKMCDRFVILHHGEILANGSLEELRKQFSLPTADLTDIYMQLTQEN

Nucleotide


Download         Length: 720 bp        

>NTDB_id=262369 C0J00_RS08275 WP_104968414.1 1626349..1627068(-) (pptA) [Streptococcus pluranimalium strain TH11417]
ATGCTAAAAATTGATCATTTAGTTGGTGGCTACGTTAATATACCTGTTTTAAAGGACATTTCTTTTGAGGTTTCCTCAGG
AGAAGTTGTTGGCTTAATTGGGCTTAACGGAGCAGGGAAATCAACGACTATCAGTGAAATCATTGGACTTTTGCAACCTT
ATCAGGGAAGTGTGACTTTGGATGGCTTGCAATTGTTAGAAAATCCAGAAAGTTACCGTCGCAAAATAGGTTATATCCCT
GAGACGCCAATCTTATATGAAGAGTTGACCTTACAAGAACATTTGGATACAGTTGCGTTAGCTTATGGTTTAGGTGAGCA
GCAGGAATTACGACAAAAGCTGTTACAACTCTTTCGTTTAGAGGACAAATTAGACTGGTATCCCATTCATTTTTCAAAAG
GGATGAAGCAGAAAGTAATGATTATTGCAGCTCTCATGATTGAGCCAAGCTTATTGATTGTGGATGAGCCTTTTTTGGGA
TTAGATCCTTTAGCTATTAGAGATTTGACGACTATTATTGCAGAGGAAAAATCTAAAGGAACAGCTGTTTTGATGAGTAC
TCATGTTCTGGATTCTGCTGAAAAAATGTGTGACCGTTTTGTCATTCTCCATCATGGTGAGATTCTAGCTAACGGTAGTC
TAGAAGAGTTACGAAAACAATTTAGTCTACCGACAGCTGATTTGACTGATATTTATATGCAATTGACGCAGGAGAATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

69.038

100

0.69
  pptA Streptococcus thermophilus LMD-9

68.201

100

0.682

Multiple sequence alignment