Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   DU470_RS09860 Genome accession   NZ_CP031131
Coordinates   1927670..1928488 (-) Length   272 a.a.
NCBI ID   WP_001124423.1    Uniprot ID   -
Organism   Staphylococcus aureus strain E16SA093     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1922670..1933488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DU470_RS09835 (DU470_09835) - 1923763..1924740 (+) 978 WP_000379098.1 metal-dependent hydrolase -
  DU470_RS09845 (DU470_09845) - 1925001..1925837 (-) 837 WP_000886456.1 hypothetical protein -
  DU470_RS09850 (DU470_09850) - 1925846..1927363 (-) 1518 WP_000535834.1 ABC transporter ATP-binding protein -
  DU470_RS09855 (DU470_09855) - 1927378..1927692 (-) 315 WP_000435806.1 YfhH family protein -
  DU470_RS09860 (DU470_09860) recX 1927670..1928488 (-) 819 WP_001124423.1 recombination regulator RecX Regulator
  DU470_RS09865 (DU470_09865) sgtB 1928749..1929558 (-) 810 WP_000830380.1 monofunctional peptidoglycan glycosyltransferase SgtB -
  DU470_RS09870 (DU470_09870) - 1929897..1930412 (-) 516 WP_000163283.1 type 1 glutamine amidotransferase domain-containing protein -
  DU470_RS09875 (DU470_09875) - 1930543..1930704 (-) 162 WP_001005407.1 SE1561 family protein -
  DU470_RS09880 (DU470_09880) yfkAB 1930928..1932079 (+) 1152 WP_001089613.1 radical SAM/CxCxxxxC motif protein YfkAB -
  DU470_RS09885 (DU470_09885) - 1932339..1932869 (-) 531 WP_000184383.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 32245.07 Da        Isoelectric Point: 5.9211

>NTDB_id=262316 DU470_RS09860 WP_001124423.1 1927670..1928488(-) (recX) [Staphylococcus aureus strain E16SA093]
MPKITKIEVQKKNKERFNLFLDEQFEMGIDIDTLVKFNLKKGQQLEAADMAEIQKYDHYRIGLNKAIQYLSYKKRTEKEV
IQYLQKEEISEQAISEVIEYCYREKLIDHQDYAESLKNTMIRTTDKGPKIYQQKLYQLGIEPNIIEMFTELYREQQELDD
IIQIAEKISKTKKGPQNKVKEKVMQSLIQKGFEMETIHAVLNEMDFTQDEGVLDDLLQRDLEKIYNKNRKKYTQQKLISK
TIEGLMRKGYKYDKIKAKLEESGIADGTEEIE

Nucleotide


Download         Length: 819 bp        

>NTDB_id=262316 DU470_RS09860 WP_001124423.1 1927670..1928488(-) (recX) [Staphylococcus aureus strain E16SA093]
GTGCCGAAGATTACTAAAATAGAAGTTCAAAAGAAAAACAAAGAACGTTTTAATCTTTTTTTAGACGAACAATTTGAAAT
GGGTATAGATATCGATACATTAGTCAAATTTAATTTAAAAAAAGGGCAACAACTTGAAGCTGCTGACATGGCAGAGATTC
AAAAGTATGATCATTATCGCATAGGTTTAAACAAAGCAATCCAATATTTATCATATAAAAAGAGAACTGAAAAAGAAGTT
ATACAATATTTACAAAAAGAAGAGATATCAGAGCAAGCGATTTCTGAAGTGATTGAATATTGTTATCGCGAAAAGTTAAT
CGACCATCAAGATTATGCGGAAAGTTTAAAGAATACAATGATTCGCACGACAGATAAAGGACCTAAAATTTATCAACAAA
AACTATATCAACTTGGTATAGAACCAAATATCATTGAAATGTTTACAGAACTTTATAGAGAACAACAGGAACTTGATGAT
ATTATCCAAATTGCTGAAAAAATATCTAAAACAAAAAAAGGGCCACAAAATAAGGTTAAAGAAAAAGTAATGCAATCTTT
AATTCAAAAAGGGTTTGAAATGGAAACCATTCATGCTGTATTGAATGAAATGGATTTTACACAAGATGAAGGGGTTTTAG
ACGATTTATTACAACGAGATTTAGAAAAAATTTATAATAAAAATCGAAAGAAGTACACGCAACAGAAATTAATTTCAAAA
ACTATCGAAGGCCTTATGAGAAAAGGATATAAATATGATAAAATTAAAGCTAAATTAGAAGAAAGTGGTATTGCCGATGG
AACAGAAGAAATTGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

99.265

100

0.993