Detailed information    

insolico Bioinformatically predicted

Overview


Name   comQ   Type   Regulator
Locus tag   BLDA23_RS18290 Genome accession   NZ_CP031126
Coordinates   3452467..3453348 (-) Length   293 a.a.
NCBI ID   WP_009329511.1    Uniprot ID   -
Organism   Bacillus licheniformis strain 0DA23-1     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 3447467..3458348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLDA23_RS18255 (BLDA23_18255) - 3447699..3448175 (+) 477 WP_003184840.1 Na+/H+ antiporter subunit E -
  BLDA23_RS18260 (BLDA23_18260) - 3448175..3448459 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  BLDA23_RS18265 (BLDA23_18265) mnhG 3448443..3448817 (+) 375 WP_003184844.1 monovalent cation/H(+) antiporter subunit G -
  BLDA23_RS18270 (BLDA23_18270) - 3448857..3449246 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  BLDA23_RS18275 (BLDA23_18275) comA 3449263..3449901 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  BLDA23_RS18280 (BLDA23_18280) comP 3449988..3452288 (-) 2301 WP_009329509.1 ATP-binding protein Regulator
  BLDA23_RS18285 (BLDA23_18285) comX 3452290..3452463 (-) 174 WP_009329510.1 competence pheromone ComX -
  BLDA23_RS18290 (BLDA23_18290) comQ 3452467..3453348 (-) 882 WP_009329511.1 polyprenyl synthetase family protein Regulator
  BLDA23_RS18295 (BLDA23_18295) degQ 3453537..3453677 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  BLDA23_RS18305 (BLDA23_18305) - 3454163..3454510 (+) 348 WP_009329512.1 hypothetical protein -
  BLDA23_RS18310 (BLDA23_18310) - 3454553..3455773 (-) 1221 WP_003184864.1 HDOD domain-containing protein -
  BLDA23_RS18315 (BLDA23_18315) - 3455952..3457421 (-) 1470 WP_003184866.1 nicotinate phosphoribosyltransferase -
  BLDA23_RS18320 (BLDA23_18320) - 3457439..3457990 (-) 552 WP_003184868.1 isochorismatase family cysteine hydrolase -

Sequence


Protein


Download         Length: 293 a.a.        Molecular weight: 33205.04 Da        Isoelectric Point: 4.8239

>NTDB_id=262216 BLDA23_RS18290 WP_009329511.1 3452467..3453348(-) (comQ) [Bacillus licheniformis strain 0DA23-1]
MNHFIDLEIPNADLNRTLHAFLDAKDQLHFSELAFYHYQSFGGTDTDAAETLGAGIELLILAFDIFDDLEDEDSPDEPWM
KINRSVAMNAATALYTISIKVIGSVSKEPVFFEKLMEYTLQSMQGQHDDLSNRPATEDECLDMIKRKSGALTALPCVLGA
MLATGKFDPTVEKYAYQLGIASQIENDYKALFYDSKSDIAKKKRTLAYLYLSRKFNQPSIDLLKTFETEDKIADKEIKCY
KEKLKAAGVTQYMYVMNQLAIQKFKKGIGELELGELKKQQLTSFVLKMFGKED

Nucleotide


Download         Length: 882 bp        

>NTDB_id=262216 BLDA23_RS18290 WP_009329511.1 3452467..3453348(-) (comQ) [Bacillus licheniformis strain 0DA23-1]
ATGAATCATTTTATAGACCTTGAGATTCCCAATGCGGACTTAAATCGGACGCTGCACGCTTTTCTAGATGCAAAGGACCA
GTTGCATTTCAGCGAGCTTGCTTTTTATCATTACCAAAGTTTCGGCGGCACGGACACCGATGCGGCAGAAACCCTTGGAG
CAGGCATTGAACTCTTGATTCTTGCGTTTGATATATTCGATGATTTAGAGGATGAAGACAGCCCCGATGAACCTTGGATG
AAAATCAACCGTTCAGTCGCAATGAATGCGGCGACTGCGCTTTATACAATAAGCATTAAAGTGATCGGTTCGGTGTCGAA
AGAACCGGTGTTTTTCGAAAAGCTAATGGAATATACACTTCAATCGATGCAGGGACAGCATGACGATCTCAGCAACCGCC
CTGCCACTGAAGATGAGTGCCTTGACATGATCAAGCGTAAATCCGGGGCGCTGACAGCCTTGCCATGCGTGCTGGGAGCT
ATGCTTGCTACGGGCAAATTTGACCCGACGGTTGAAAAGTACGCCTACCAGCTGGGCATTGCTTCACAAATCGAAAATGA
TTATAAAGCACTTTTTTATGATTCCAAAAGCGATATCGCCAAGAAAAAGCGGACGCTTGCGTACTTATATTTGTCAAGAA
AATTTAACCAGCCGTCGATTGATTTGTTAAAAACATTTGAAACTGAGGATAAAATTGCCGATAAAGAAATAAAATGCTAT
AAAGAGAAATTGAAGGCAGCAGGCGTCACTCAGTATATGTATGTTATGAATCAGCTCGCTATTCAGAAATTTAAGAAGGG
AATCGGGGAGCTGGAGTTGGGGGAGCTGAAAAAACAGCAGTTGACTTCGTTTGTATTGAAGATGTTTGGGAAGGAGGATT
AG

Domains


Predicted by InterProScan.

(41-227)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45.172

98.976

0.447


Multiple sequence alignment