Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BLDA23_RS15955 Genome accession   NZ_CP031126
Coordinates   3017929..3018678 (-) Length   249 a.a.
NCBI ID   WP_003184052.1    Uniprot ID   -
Organism   Bacillus licheniformis strain 0DA23-1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3012929..3023678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLDA23_RS15925 (BLDA23_15925) - 3013132..3013575 (+) 444 WP_048355991.1 helix-turn-helix transcriptional regulator -
  BLDA23_RS15930 (BLDA23_15930) - 3013679..3014086 (+) 408 WP_225315941.1 ImmA/IrrE family metallo-endopeptidase -
  BLDA23_RS15935 (BLDA23_15935) - 3014126..3015514 (+) 1389 WP_080626969.1 recombinase family protein -
  BLDA23_RS15940 (BLDA23_15940) - 3015530..3015913 (-) 384 Protein_3107 UPF0758 domain-containing protein -
  BLDA23_RS15945 (BLDA23_15945) - 3015968..3016540 (-) 573 WP_003184048.1 Maf family protein -
  BLDA23_RS15950 (BLDA23_15950) - 3016694..3017725 (-) 1032 WP_003184050.1 SPOR domain-containing protein -
  BLDA23_RS15955 (BLDA23_15955) comC 3017929..3018678 (-) 750 WP_003184052.1 A24 family peptidase Machinery gene
  BLDA23_RS15960 (BLDA23_15960) - 3018821..3020119 (-) 1299 WP_009329287.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  BLDA23_RS15965 (BLDA23_15965) - 3020201..3022843 (-) 2643 WP_003184055.1 valine--tRNA ligase -
  BLDA23_RS15970 (BLDA23_15970) - 3023305..3023496 (+) 192 WP_003184058.1 hypothetical protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 26944.49 Da        Isoelectric Point: 8.7373

>NTDB_id=262205 BLDA23_RS15955 WP_003184052.1 3017929..3018678(-) (comC) [Bacillus licheniformis strain 0DA23-1]
MFIFYLFTAGLVLGSFFNSAGRRISEKISLIAPRSLCRVCKRQLGFSELIPVLSYLMQRGRCKGCQTPLSIVYPAVELSA
AILFAFAGMHVGHEGELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSGAMAGGMLPLL
TLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAAAGTVLGLIALLAGKLKKNEPMPFAPAILAGTLTSCFYGEPMI
EWYLQTAWW

Nucleotide


Download         Length: 750 bp        

>NTDB_id=262205 BLDA23_RS15955 WP_003184052.1 3017929..3018678(-) (comC) [Bacillus licheniformis strain 0DA23-1]
ATGTTCATCTTTTACCTTTTTACGGCAGGTTTAGTGCTCGGCTCTTTTTTTAATTCGGCCGGGCGCCGCATTTCTGAAAA
GATATCATTGATTGCTCCGCGTTCCCTCTGCCGCGTCTGCAAAAGGCAGCTGGGCTTCTCGGAGCTGATACCGGTTTTGT
CCTATTTGATGCAGCGGGGGAGGTGCAAAGGATGTCAAACCCCGCTCTCGATCGTGTATCCGGCAGTTGAGCTCTCCGCC
GCCATCCTGTTTGCGTTTGCCGGCATGCACGTTGGGCATGAGGGGGAGCTGGTGATTGTGCTTGCTCTTATATCTCTGCT
TTTGATCGTCTTTGTATCTGATGTGACACACATGATCATTCCGGATGCTGTTCTTTGTTTTTTCCTGCCTGTCTTTGCCG
TCGGACGATTCCTTGTTCCTCTGGAACAGTGGCACTCAAGTTTGAGCGGTGCGATGGCCGGCGGTATGCTGCCCCTCTTG
ACGCTGCTTTTGACGAAAGGGGGGATCGGCTGGGGAGACGTAAAGCTGTTTGCGGTAATCGGCATGGCGCTCGGCAGCCG
CCTCCTCGTTCTCGCTTTTTTCCTCTCGGCAGCCGCAGGAACGGTGCTTGGTCTTATTGCACTCCTGGCAGGCAAACTGA
AGAAAAATGAACCAATGCCGTTTGCTCCCGCGATTCTGGCCGGGACGCTGACGAGCTGCTTCTATGGCGAACCAATGATC
GAGTGGTACCTTCAAACGGCATGGTGGTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(102-205)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

47.934

97.189

0.466

Multiple sequence alignment