Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   TERY_RS07450 Genome accession   NC_008312
Coordinates   2452863..2453960 (+) Length   365 a.a.
NCBI ID   WP_011611260.1    Uniprot ID   Q115E0
Organism   Trichodesmium erythraeum IMS101     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2447863..2458960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TERY_RS07430 (Tery_1601) - 2447955..2448371 (+) 417 WP_011611256.1 hypothetical protein -
  TERY_RS07435 (Tery_1602) rsmI 2448737..2449576 (+) 840 WP_011611257.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  TERY_RS07440 (Tery_1603) - 2450017..2451279 (+) 1263 WP_011611258.1 Mur ligase family protein -
  TERY_RS07445 (Tery_1604) - 2451467..2452744 (-) 1278 WP_011611259.1 extracellular solute-binding protein -
  TERY_RS07450 (Tery_1605) pilM 2452863..2453960 (+) 1098 WP_011611260.1 type IV pilus assembly protein PilM Machinery gene
  TERY_RS07455 (Tery_1606) - 2453967..2454782 (+) 816 WP_011611261.1 PilN domain-containing protein -
  TERY_RS07460 (Tery_1607) - 2454785..2455579 (+) 795 WP_011611262.1 hypothetical protein -
  TERY_RS07465 (Tery_1608) - 2456320..2457357 (-) 1038 WP_011610086.1 IS630 family transposase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 40377.05 Da        Isoelectric Point: 3.9986

>NTDB_id=26220 TERY_RS07450 WP_011611260.1 2452863..2453960(+) (pilM) [Trichodesmium erythraeum IMS101]
MLNYLKNLFQTKQPGIGIEVSPEKINLAKIQQQGDQLKLVNFATAQVPENVFSEGQIIDIPTISELIESIIADNNIKTRR
VATAISAREAVTRVIPVPAELNDQELQDYMNQEAGLYLPFPREQADVDYQKLGNIVDSDDDIEKVQVALVATRKEITDAY
IEAFSEAGLVIDILEVSNFALIRTVKDILQQYGPQEATVIADLEFDSTELAIVVDGIPQFNRTIPIGTYQMQSSLNEAMN
LPPTRDTTQLLKMTIPVLDTMGISFDKADSGTNALLKVLAELGDELRRSIDFYLNQFEDLEVAQLLLTGPGAAIGQLDDF
FMQRLSLPASKVDPIEVLGLETEVEIPPEQRYGLGIVLGLGLREV

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=26220 TERY_RS07450 WP_011611260.1 2452863..2453960(+) (pilM) [Trichodesmium erythraeum IMS101]
ATGCTTAATTACTTAAAAAACTTATTTCAAACAAAGCAGCCAGGAATAGGAATAGAAGTTAGTCCGGAAAAAATTAATCT
TGCTAAGATCCAGCAACAAGGAGATCAACTAAAATTAGTAAATTTTGCTACAGCACAAGTCCCAGAAAATGTATTTTCTG
AGGGTCAAATAATTGATATCCCCACAATATCAGAATTAATAGAATCAATTATTGCAGACAATAACATAAAAACTCGCAGA
GTAGCAACAGCAATTTCAGCCAGAGAAGCAGTTACCCGTGTAATTCCCGTACCAGCAGAATTAAATGACCAAGAATTACA
GGATTATATGAATCAAGAAGCAGGTTTATACTTACCATTCCCGAGAGAACAAGCAGATGTGGACTATCAAAAATTGGGAA
ATATAGTAGACTCAGATGATGACATAGAAAAAGTACAAGTAGCTTTAGTTGCAACGAGAAAAGAAATAACAGATGCCTAT
ATAGAAGCCTTTTCAGAAGCAGGATTAGTAATAGATATTTTAGAGGTAAGTAACTTTGCCCTCATCCGCACAGTTAAAGA
TATACTCCAACAATATGGGCCTCAAGAAGCGACAGTAATTGCAGATTTAGAATTTGACAGTACCGAACTTGCTATCGTAG
TAGATGGAATACCCCAGTTTAACCGAACAATTCCTATTGGTACTTATCAAATGCAATCTTCCTTAAATGAAGCGATGAAC
TTACCTCCAACCAGAGATACTACCCAGTTACTAAAGATGACTATTCCAGTGTTAGATACAATGGGAATTTCATTCGATAA
AGCTGATTCTGGAACGAATGCCTTGTTAAAAGTATTAGCAGAATTAGGAGATGAGCTGCGACGTTCAATAGATTTCTATC
TCAATCAATTTGAAGATTTGGAGGTGGCACAATTATTATTAACAGGGCCAGGAGCAGCAATAGGACAACTAGATGACTTT
TTCATGCAACGTTTAAGTTTGCCAGCGTCTAAAGTGGATCCAATTGAAGTTTTAGGCTTAGAAACAGAGGTAGAAATTCC
CCCAGAACAACGTTATGGTCTAGGAATTGTATTAGGTTTAGGACTAAGAGAGGTGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q115E0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

52.861

100

0.532

Multiple sequence alignment