Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CJJ81176_RS05200 Genome accession   NC_008787
Coordinates   1008127..1008675 (+) Length   182 a.a.
NCBI ID   WP_002854048.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni 81-176     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1003127..1013675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJJ81176_RS05165 (CJJ81176_1082) - 1003317..1003742 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  CJJ81176_RS05170 (CJJ81176_1083) - 1003806..1004426 (+) 621 WP_002869051.1 NAD(P)H-dependent oxidoreductase -
  CJJ81176_RS05175 (CJJ81176_1084) - 1004426..1005031 (+) 606 WP_002853752.1 NAD(P)H-dependent oxidoreductase -
  CJJ81176_RS05180 (CJJ81176_1085) pgsA 1005156..1005692 (+) 537 WP_002812871.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CJJ81176_RS05185 (CJJ81176_1086) rseP 1005689..1006795 (+) 1107 WP_002812870.1 RIP metalloprotease RseP -
  CJJ81176_RS05190 (CJJ81176_1087) - 1006788..1007654 (+) 867 WP_002812869.1 VirK family antimicrobial peptide resistance protein -
  CJJ81176_RS05195 (CJJ81176_1088) rpsF 1007741..1008118 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  CJJ81176_RS05200 (CJJ81176_1089) ssb 1008127..1008675 (+) 549 WP_002854048.1 single-stranded DNA-binding protein Machinery gene
  CJJ81176_RS05205 (CJJ81176_1090) rpsR 1008686..1008946 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  CJJ81176_RS05210 (CJJ81176_1091) lon 1009006..1011381 (-) 2376 WP_002853487.1 endopeptidase La -
  CJJ81176_RS05215 (CJJ81176_1092) - 1011398..1012045 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  CJJ81176_RS05220 (CJJ81176_1093) fliW 1012206..1012595 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  CJJ81176_RS05225 (CJJ81176_1094) proC 1012595..1013326 (+) 732 WP_002869050.1 pyrroline-5-carboxylate reductase Machinery gene
  CJJ81176_RS05230 (CJJ81176_1095) ctsT 1013323..1013625 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20626.52 Da        Isoelectric Point: 5.0431

>NTDB_id=26220 CJJ81176_RS05200 WP_002854048.1 1008127..1008675(+) (ssb) [Campylobacter jejuni subsp. jejuni 81-176]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=26220 CJJ81176_RS05200 WP_002854048.1 1008127..1008675(+) (ssb) [Campylobacter jejuni subsp. jejuni 81-176]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGTGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39

Multiple sequence alignment