Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CDN75_RS22860 Genome accession   NZ_CP025520
Coordinates   4414096..4414725 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain DH5alpha     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4409096..4419725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDN75_RS22835 ycbZ 4409497..4411257 (-) 1761 WP_000156518.1 Lon protease family protein -
  CDN75_RS22840 matP 4411443..4411895 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CDN75_RS22845 ompA 4411971..4413011 (-) 1041 WP_000750416.1 porin OmpA -
  CDN75_RS22855 sulA 4413368..4413877 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CDN75_RS22860 sxy/tfoX 4414096..4414725 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CDN75_RS22865 yccS 4414688..4416850 (-) 2163 WP_000875061.1 YccS family putative transporter -
  CDN75_RS22870 yccF 4416860..4417306 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CDN75_RS22875 helD 4417429..4419483 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=262177 CDN75_RS22860 WP_000839153.1 4414096..4414725(+) (sxy/tfoX) [Escherichia coli strain DH5alpha]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=262177 CDN75_RS22860 WP_000839153.1 4414096..4414725(+) (sxy/tfoX) [Escherichia coli strain DH5alpha]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment