Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CJJ81176_RS03090 Genome accession   NC_008787
Coordinates   591312..591695 (+) Length   127 a.a.
NCBI ID   WP_002869355.1    Uniprot ID   A1VYZ5
Organism   Campylobacter jejuni subsp. jejuni 81-176     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 586312..596695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJJ81176_RS03070 (CJJ81176_0659) - 586391..588325 (-) 1935 WP_002869357.1 RNB domain-containing ribonuclease -
  CJJ81176_RS03075 (CJJ81176_0660) ilvC 588444..589466 (+) 1023 WP_002857064.1 ketol-acid reductoisomerase -
  CJJ81176_RS03080 (CJJ81176_0661) - 589470..590552 (+) 1083 WP_002869356.1 divergent polysaccharide deacetylase family protein -
  CJJ81176_RS03085 (CJJ81176_0662) dprA 590542..591315 (+) 774 WP_002857196.1 DNA-processing protein DprA Machinery gene
  CJJ81176_RS03090 (CJJ81176_0663) dprB 591312..591695 (+) 384 WP_002869355.1 Holliday junction resolvase RuvX Machinery gene
  CJJ81176_RS03095 (CJJ81176_0664) - 591724..592563 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CJJ81176_RS03100 (CJJ81176_0665) msrA 592739..593236 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CJJ81176_RS03105 (CJJ81176_0666) ppa 593277..593795 (-) 519 WP_002855031.1 inorganic diphosphatase -
  CJJ81176_RS03110 (CJJ81176_0667) adk 593805..594383 (-) 579 WP_002855137.1 adenylate kinase -
  CJJ81176_RS03115 (CJJ81176_0668) aspS 594380..596131 (-) 1752 WP_002869354.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14143.68 Da        Isoelectric Point: 9.8358

>NTDB_id=26214 CJJ81176_RS03090 WP_002869355.1 591312..591695(+) (dprB) [Campylobacter jejuni subsp. jejuni 81-176]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSREEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=26214 CJJ81176_RS03090 WP_002869355.1 591312..591695(+) (dprB) [Campylobacter jejuni subsp. jejuni 81-176]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGAGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1VYZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.094

100

0.441

Multiple sequence alignment