Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   BLDA23_RS07150 Genome accession   NZ_CP031126
Coordinates   1363417..1366809 (+) Length   1130 a.a.
NCBI ID   WP_011197745.1    Uniprot ID   Q65LJ7
Organism   Bacillus licheniformis strain 0DA23-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1358417..1371809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLDA23_RS07140 (BLDA23_07140) addA 1358482..1362174 (+) 3693 WP_080626892.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  BLDA23_RS07145 (BLDA23_07145) sbcD 1362239..1363420 (+) 1182 WP_011197744.1 exonuclease subunit SbcD -
  BLDA23_RS07150 (BLDA23_07150) sbcC 1363417..1366809 (+) 3393 WP_011197745.1 exonuclease subunit SbcC Machinery gene
  BLDA23_RS07155 (BLDA23_07155) - 1366853..1367071 (-) 219 WP_009328895.1 spore germination protein -
  BLDA23_RS07160 (BLDA23_07160) - 1367127..1367513 (-) 387 WP_009328894.1 spore germination protein GerPE -
  BLDA23_RS07165 (BLDA23_07165) - 1367510..1367689 (-) 180 WP_071583745.1 spore gernimation protein GerPD -
  BLDA23_RS07170 (BLDA23_07170) - 1367686..1368291 (-) 606 WP_009328892.1 spore germination protein GerPC -
  BLDA23_RS07175 (BLDA23_07175) - 1368312..1368554 (-) 243 WP_003180443.1 spore germination protein GerPB -
  BLDA23_RS07180 (BLDA23_07180) - 1368566..1368787 (-) 222 WP_003180445.1 spore germination protein -
  BLDA23_RS07185 (BLDA23_07185) - 1368969..1369262 (+) 294 WP_080626893.1 DUF3784 domain-containing protein -
  BLDA23_RS07190 (BLDA23_07190) - 1369344..1369523 (-) 180 WP_011197747.1 aspartyl-phosphate phosphatase Spo0E family protein -
  BLDA23_RS07195 (BLDA23_07195) - 1369690..1370763 (-) 1074 WP_034291635.1 CotH kinase family protein -
  BLDA23_RS07200 (BLDA23_07200) - 1370929..1371435 (+) 507 WP_009328889.1 hypothetical protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 129087.79 Da        Isoelectric Point: 5.4247

>NTDB_id=262136 BLDA23_RS07150 WP_011197745.1 1363417..1366809(+) (sbcC) [Bacillus licheniformis strain 0DA23-1]
MKPISLSIKGLHSFRQEQVIDFERLCDAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDELAVSFTF
KLQTGHETAYKVERVFKRTDAVKVKTSICRFIEMKEEQIVLADKANEVNRKIEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRQMLQRLFNLEQYGDRLVKKLKKQAQTAQSRKNEMLAEQAGLGDAGEEALKLAEQHLEEAETLLQSKRRERDAEA
QRFAEYQEIWNLQQEKESYLKKEAELLKKKEQIREKESRLHLAETANTLKPYADAFLAAREDAERALREEKQAREQLEQY
EELHKKTECEYENFRRHKNEKEPELLKQEEQLTALKEIENKRLAAQAEAEKKQREQRLKEEEIKHAADELAKVKSLLERG
TAKQNQLKAELKSVQVSSEERKNCRKANQLAFHIQQLNSDAALEKKRLDQQEALIKELRQEQQAVDQKVKDETERIQALF
AAVERAYALVCETDRSLSETVRLATQKKEEIVAKRKQANRDQLAIELAKQLKEGEPCPVCGSVHHEMPAGVGTESPSFKE
TESELEKTEAIIAEAGALAQEFLSAKVALEQQSGHLMSECPFLVKSKHELPETAASLEEGTIPERFSRISFEWKGIRQDL
AETKSRMSKLLHTYKELCKKRDQISERLSHEEKEQNRLQNRVRELNDELNERQKSFGEQFGGLSYEQAEKWQKTIEEKDL
AAEEFEKRIETSVEFLTEHEQQKEKLTERLFALDKEKLDLHYAVESLKKDINDYQKELTGYPDTAAIDEKLQDVKTQLAK
LHEQEQTLYGRLKETESEVSRLRGQTKGCELALREAEARLAKAADIWQEKAGGTPFEKASEVKASILDRDELSRLKEDIQ
LYWDHTKQCESNIKRITEKLDGRSVSEENWEKAAVTKDQAEEAFSKALEERGAAGKALAVIRENHKRFKELETSLAEWQT
YIDRLDKLQAVFKGNSFVEYLAEEQLESVTRDASARLGELTRQRYAIEVDSEGGFVMRDDANGGVKRPVTSLSGGETFLT
SLALALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPAEPSG
KGTAVSLEMI

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=262136 BLDA23_RS07150 WP_011197745.1 1363417..1366809(+) (sbcC) [Bacillus licheniformis strain 0DA23-1]
ATGAAGCCGATTTCTCTGTCTATTAAGGGCCTGCACAGTTTCAGGCAGGAGCAGGTGATCGATTTTGAGCGCCTGTGCGA
TGCCGGTGTATTCGGCATCTTCGGGCCGACCGGAAGCGGCAAGTCGTCGATTCTTGATGCGATGACTCTTGCTTTGTACG
GGAAAGTGGAGCGGGCCGCCAATAATACGCACGGCATTTTGAACCATGCCGAAGATGAGCTTGCCGTATCGTTTACGTTT
AAGCTGCAGACAGGCCATGAGACGGCTTATAAAGTGGAACGGGTCTTTAAGCGGACAGACGCCGTCAAGGTCAAAACGTC
GATATGCCGCTTTATTGAAATGAAAGAGGAACAAATCGTCCTGGCCGATAAAGCGAATGAAGTAAACCGAAAAATCGAAG
AGCTGCTGGGCTTGACGATCGACGATTTTACAAGGGCAGTCGTCCTGCCGCAAGGAAAATTCGCCGAATTTCTTTCCTTG
AAAGGAGCGGAGCGAAGGCAGATGCTTCAGCGCCTGTTCAACCTTGAACAATACGGGGACAGGCTCGTCAAAAAACTAAA
GAAACAGGCGCAAACAGCTCAGTCCAGAAAAAACGAGATGCTTGCCGAGCAGGCTGGATTGGGCGATGCGGGGGAAGAGG
CGCTGAAGCTGGCGGAACAGCATCTCGAAGAAGCCGAAACCCTTTTGCAAAGCAAGAGGCGCGAACGAGATGCGGAAGCG
CAGCGCTTTGCGGAGTACCAGGAAATTTGGAATCTGCAGCAAGAAAAAGAAAGCTATCTAAAAAAAGAGGCGGAGCTTTT
AAAGAAAAAGGAACAGATCCGGGAAAAAGAAAGCCGCCTGCATCTCGCTGAAACGGCAAATACGCTCAAGCCTTATGCAG
ACGCCTTTCTGGCAGCGCGGGAAGATGCCGAGCGCGCACTTCGGGAAGAAAAACAAGCGCGGGAACAATTAGAACAATAC
GAAGAGCTTCATAAAAAAACAGAGTGCGAGTACGAGAATTTCAGGCGTCATAAAAATGAAAAAGAACCGGAGCTTCTCAA
GCAAGAAGAACAGCTCACCGCTTTGAAGGAAATTGAAAACAAGCGGCTTGCCGCACAGGCAGAAGCTGAGAAAAAGCAGC
GGGAACAGCGCTTGAAAGAAGAGGAAATCAAGCATGCGGCAGACGAACTGGCCAAGGTGAAAAGCCTGCTTGAACGCGGG
ACAGCCAAGCAAAATCAGCTGAAAGCGGAGCTGAAATCTGTCCAGGTATCCAGCGAAGAGCGCAAAAACTGCCGGAAGGC
CAATCAGCTTGCTTTTCACATTCAGCAGCTTAACAGCGATGCCGCTTTAGAAAAAAAACGGCTCGATCAGCAGGAGGCGC
TGATCAAAGAGCTCCGGCAAGAACAGCAAGCGGTGGATCAGAAGGTGAAGGATGAAACCGAACGCATCCAGGCATTGTTT
GCCGCTGTCGAACGAGCGTATGCGCTCGTTTGCGAAACGGACAGATCGCTCTCTGAGACCGTCCGTCTCGCGACTCAAAA
GAAAGAAGAGATTGTCGCAAAACGGAAACAGGCAAACCGTGATCAGCTGGCAATCGAACTGGCAAAGCAGCTCAAAGAGG
GTGAGCCTTGTCCGGTCTGCGGGTCTGTACATCATGAAATGCCCGCGGGTGTCGGTACGGAAAGCCCGTCCTTTAAAGAG
ACGGAATCCGAACTGGAGAAAACGGAAGCCATCATCGCAGAAGCCGGCGCGCTGGCTCAGGAGTTTCTCTCAGCCAAAGT
GGCGCTCGAACAGCAGTCCGGCCACCTGATGAGCGAATGCCCGTTTTTAGTCAAAAGCAAACACGAACTGCCTGAAACTG
CTGCATCGCTAGAAGAAGGCACCATTCCCGAACGGTTCAGCCGCATCAGCTTTGAATGGAAAGGAATCAGACAGGATCTC
GCCGAGACAAAAAGCCGGATGTCAAAGCTCCTTCACACATATAAAGAGCTCTGCAAAAAACGCGACCAAATCAGCGAACG
CCTCAGCCATGAAGAAAAAGAGCAAAACAGGCTTCAAAACCGCGTCCGCGAATTGAATGACGAGTTAAATGAACGCCAAA
AAAGCTTCGGCGAACAATTCGGCGGCCTCTCTTATGAACAGGCTGAAAAATGGCAAAAAACGATTGAAGAAAAAGATCTG
GCCGCAGAGGAATTCGAAAAGCGAATCGAAACGAGCGTCGAATTTCTCACGGAACATGAACAGCAAAAAGAGAAGCTCAC
CGAGCGCTTGTTTGCGCTTGATAAAGAAAAGCTTGACCTTCATTATGCGGTCGAAAGCCTCAAAAAAGACATAAACGATT
ATCAAAAAGAGCTGACGGGCTATCCCGATACAGCTGCGATCGACGAAAAGCTTCAAGACGTGAAAACGCAGTTGGCCAAG
CTGCATGAGCAGGAACAGACGCTTTACGGACGGCTCAAGGAGACCGAATCCGAAGTCAGCCGTTTAAGAGGACAGACTAA
AGGGTGTGAGCTCGCTTTGCGCGAAGCGGAAGCAAGGCTTGCGAAAGCGGCGGACATCTGGCAGGAAAAAGCCGGAGGCA
CACCGTTCGAAAAGGCCTCTGAAGTGAAAGCGAGCATTTTGGACCGCGATGAGCTTTCCCGGCTGAAAGAAGACATTCAA
CTGTATTGGGATCACACAAAGCAGTGCGAGTCCAATATCAAGCGAATTACGGAAAAGCTTGACGGCAGATCTGTTTCTGA
AGAGAATTGGGAAAAAGCCGCAGTCACGAAGGACCAGGCGGAGGAGGCATTCAGCAAAGCTCTAGAGGAAAGGGGAGCGG
CCGGCAAAGCTCTCGCCGTCATCCGCGAGAACCATAAAAGGTTTAAGGAGCTTGAAACATCGTTGGCTGAATGGCAGACA
TACATCGACCGCCTTGATAAGCTCCAAGCCGTCTTTAAAGGAAACAGCTTTGTTGAATACTTGGCAGAAGAGCAGCTTGA
AAGCGTCACAAGAGACGCATCTGCAAGACTCGGAGAACTGACAAGGCAGCGGTATGCAATTGAAGTCGACTCAGAAGGCG
GCTTTGTGATGAGGGACGATGCCAACGGCGGAGTCAAGCGCCCTGTTACGAGTCTGTCAGGCGGGGAGACATTTCTGACT
TCGCTTGCGCTGGCGCTTGCACTCTCGGCGCAGATTCAGCTTCGCGGAGAGTATCCGCTCCAATTCTTCTTTTTGGACGA
AGGATTTGGCACGCTGGATCAGGATTTGCTGGATACGGTCGTGACTGCGTTGGAGAAGCTTCAGTCTGACAATCTGTCGG
TCGGTGTGATCAGCCATGTTCAGGAACTTCGGGCAAGGCTGCCGAAAAAGCTGATTGTGCATCCGGCTGAACCAAGCGGC
AAAGGTACAGCCGTATCGCTTGAAATGATTTAA

Domains

Predicted by InterProScan.

P-loop containing region of AAA domain (AAA_29)

(13-61)

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65LJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

56.549

100

0.565